Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1735 ATGGGGACACGACCTGAGCAACCATGTCGAGAGGAAGAGGAAGATGAGCTGCTAGGTCGTGGAACAACACTTTCTGGCCAATCAATTTCCACTAGTAAAAGTGTAGGGTCTCCTTCCAGTCGGAGTGAGCAGACAATGGCTACACCGGCAAGTGATAACACTTTTCTAAGACTAAATCATCTTGACATCCATGGTGATGATGCTGGATCTCAGGGAGCAGTTGCTAGCAAGAAGAAAAAGAGGGGCCAGCGTGCTGTTGGAGGTGACAAGAGTGGAAGAGGGCTCCGCCAATTTAGTATGAAAGTGTGCGAGAAGGTGGAAAGTAAGGGAAGAACCACTTACAATGAGGTTGCAGATGAACTTGTGGCTGAATTTGCTGACCCAAGCAGTAGCGTTTCAACTCCTGATCAGCAACAATATGATGAGAAAAACATTCGTAGAAGGGTTTATGATGCTTTGAATGTTCTCATGGCAATGGATATAATTTCCAAGGATAAAAAGGAAATTCAATGGAAGGGTCTCCCTCGTACAAGTCTGAATGATATTGAAGAATTAAAGACGGAGCGCCTTCAGCTTCGGAATCGGATTGAAAAGAAAGCTGCCTACCTGCAGGAGCTGGAGGAGCAATCTCTGTTCACTGATTCCTTGTCTTATTACATCAAGTACATAGGTCTTCAGAATCTCATACAACGAAATGAGCAATTATATGGATCTGGAAATGCTCCCAGTGGAGGGGTAGCCTTACCTTTTATTCTTGTACAGACTCGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTACATTTTGATTTCAATAGCACTCCTTTTGAGCTGCATGATGACAACTATGTCCTCAAGGCAATGAAATTTTGTGAGAGACCACAGAATGATAATATGACGCAGAATCTTATGGACGGGGGTGAAGGTTCTAGCATGTCAGGCTTGTATCAGGCACAGGTCACTCCTTCAGCATCAAACCAACCGGTTAGAACTCCTACCTCACCGCCTCTCCCTGGAATATTGAAGGCCAGAGTTAAGCATGAGCATTGA 1065 0.446 MGTRPEQPCREEEEDELLGRGTTLSGQSISTSKSVGSPSSRSEQTMATPASDNTFLRLNHLDIHGDDAGSQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPSSSVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKTERLQLRNRIEKKAAYLQELEEQSLFTDSLSYYIKYIGLQNLIQRNEQLYGSGNAPSGGVALPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCERPQNDNMTQNLMDGGEGSSMSGLYQAQVTPSASNQPVRTPTSPPLPGILKARVKHEH 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1735 354 MobiDBLite consensus disorder prediction 324 354 - -
Lele03g1735 354 Coils Coil 182 209 - -
Lele03g1735 354 MobiDBLite consensus disorder prediction 21 55 - -
Lele03g1735 354 Gene3D Transcription factor DP 179 318 IPR038168 -
Lele03g1735 354 SMART DP_2 180 352 IPR014889 -
Lele03g1735 354 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Lele03g1735 354 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Lele03g1735 354 MobiDBLite consensus disorder prediction 1 93 - -
Lele03g1735 354 MobiDBLite consensus disorder prediction 1 19 - -
Lele03g1735 354 FunFam Transcription factor-like protein DPB 179 315 - -
Lele03g1735 354 PANTHER TRANSCRIPTION FACTOR DP 23 328 IPR015648 GO:0005667|GO:0051726
Lele03g1735 354 SUPERFAMILY E2F-DP heterodimerization region 179 306 IPR037241 -
Lele03g1735 354 PIRSF Txn_factor_DP 5 354 IPR015648 GO:0005667|GO:0051726
Lele03g1735 354 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Lele03g1735 354 FunFam Transcription factor-like protein DPB 85 178 - -
Lele03g1735 354 Gene3D - 85 178 IPR036388 -
Lele03g1735 354 CDD DP_DD 178 293 IPR014889 -
Lele03g1735 354 Pfam Transcription factor DP 181 308 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1735 Lele-ChrLele03 12383785 12389724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1735 91 301 E2F-DP Transcription Factor Family AT5G02470 52.830 7.88e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lele03g1735 DP 1.3e-36 No_clan