Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1706 ATGGCTTATGGTGTTTCAGGGTTGTCATGGTCCGTGGATGAGAAGTCCCTCAAAGATGCTTTCTCTTCATTTGGTGAAGTAACTGAAGTGAGGATGGCTTATGATAAAGACAGTGGTCGGTCTAGAGGGTTTGGATTTGTCATATTTTCGGATGAAAATAATGCCAAAGCTGCAAAAGACGCCATGGATGGCAAGAAAAGATGAGCGTTTCCGGGAGTAGCCACGCTCTCTGGAGGATCTTGTATCCCGGCCGCAGAGAGTGACCAAATTTGGGCTTCGATTGGAAACCTGAAAAGGCGGATACTGGGGATAGCGCCATTGGTGAGATTGGTACTGGATGACGTGGGTCGTAGCTATAGGCTCTTTGGGCTCGCAGCGGTGGAAATTGCAGTGGCGGGGGTGGTGTTGGCGATTGAGGGGGTTATGTCCATGGCTCAAACATCTAGGGTGGCAACAAAATTAAATACTAAGCTTTTAAGGGCTTGTTGGGTTTAG 495 0.4828 MAYGVSGLSWSVDEKSLKDAFSSFGEVTEVRMAYDKDSGRSRGFGFVIFSDENNAKAAKDAMDGKKRXAFPGVATLSGGSCIPAAESDQIWASIGNLKRRILGIAPLVRLVLDDVGRSYRLFGLAAVEIAVAGVVLAIEGVMSMAQTSRVATKLNTKLLRACWV 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1706 164 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 89 IPR000504 GO:0003723
Lele03g1706 164 SMART rrm1_1 5 75 IPR000504 GO:0003723
Lele03g1706 164 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 66 IPR000504 GO:0003723
Lele03g1706 164 SUPERFAMILY RNA-binding domain, RBD 5 66 IPR035979 GO:0003676
Lele03g1706 164 Gene3D - 4 71 IPR012677 -
Lele03g1706 164 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 5 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1706 Lele-ChrLele03 11934135 11939869 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1706 5 58 C2H2 Transcription Factor Family AT2G19380 42.593 3.74e-11 58.5