Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1621 ATGGCGCATAGGTTGCTGAGGGATCATGAAGCAGATGGTTGGGAACGATCTGATTTTCCTATTATCTGCGAATCATGCCTCGGTGACAACCCATATGTTCGTATGACAAGAGCTGAGTATGATAAGGAGTGTAAGATTTGTACACGGCCGTTTACTGTTTTTAGATGGAGACCTGGACGAGATGCAAGATATAAGAAAAGTGAGATCTGCCAAACATGTAGTAAATTGAAAAACGTTTGTCAAGTCTGCCTTCTGGATCTTGAGTATGGATTACCAGTTCAAGTCCGAGATACAGCTCTCAGCATCAGTTCCCATGATGCTATTCCAAAGAGTGATGTTAATCGGGAGTATTTTGCTGAAGAACACGATCGCAAGACTCGAGCTGGCTTGGATTATGAATCCTCATATGGGAAAGTACGCGCAAATGATACTATTTTGAAGCTGCAAAGGACTACACCATACTACAAAAGAAACCGGGCTCATATTTGCAGTTTCTACATAAGGGGTGAGTGTACCAGAGGAGCTGAATGCCCTTATAGGCATGAGATGCCAGTGACCGGGGAGTTGTCACAACAAAATATCAAAGATCGTTATTATGGGGTGAATGATCCTGTGGCATTGAAGTTACTTGGCAAGGCAGGAGAGATGCCCTCTCTGGAGCCTCCGGAGGATGAGACCATTAGAACTCTTTATGTTGGTGGGCTTGATGCTAGGGTCAGTGAGCAGGATCTTCGTGATCACTTTTACTCCCATGGCGAAATTGAATCCATCAAGATGGTGCTCCAACGTGCTTGTGCTTTCGTAACCTACACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCCAACAAGCTAGTCATCAGGGGCCTAAGGTTGAAGCTGATGTGGGGTAGACCTCAGACGTCAAAGCCTGACTCTGAAAGTTCTGATCAAGCGAGGCAGCAGGCATCCGTGGCTCATAGCGGGTTGTTGCCTCGAGCCGTCATATCACAACAGCAGAGCCAGGATCAAACTCAGGGAGCGCATTACTACAACATTCCACCTCCTCCTCAGCAAGATAGAAGCTACTATCCATCAATGGATCCTCAGAGAATGGGCGCTGTTATTCCGTCCCAAGATGGTGGTCCTCCTGGTGGGGCTACCGGGACCAGCGAGAACAACAAACCCAATTTGGAGAAGCAGCAAATCCAGCATTTTGCCCATCCAATGATGCCTCCACCACCTGGGCAATATCATCATCATCAGTATTACGCCCCGCCCCCGTACGGTTATATGCCACCTGTACCTGGTTATCAACAATACCGACCACCATACAACCATGGAATGGCTTCATCTCAGCCACCGGCTGTAAACCAGCCATATCAGCATTTCATGAAGCCGGGTTCATCTGATCCCTCAGGGTCAGCACCAACAGGATCAGTACCAGCTGGCGGTTCTGCACCTGCAGAAGCCGGAACATCGACCTCGGCCTAA 1479 0.4814 MAHRLLRDHEADGWERSDFPIICESCLGDNPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSISSHDAIPKSDVNREYFAEEHDRKTRAGLDYESSYGKVRANDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMPSLEPPEDETIRTLYVGGLDARVSEQDLRDHFYSHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIRGLRLKLMWGRPQTSKPDSESSDQARQQASVAHSGLLPRAVISQQQSQDQTQGAHYYNIPPPPQQDRSYYPSMDPQRMGAVIPSQDGGPPGGATGTSENNKPNLEKQQIQHFAHPMMPPPPGQYHHHQYYAPPPYGYMPPVPGYQQYRPPYNHGMASSQPPAVNQPYQHFMKPGSSDPSGSAPTGSVPAGGSAPAEAGTSTSA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1621 492 MobiDBLite consensus disorder prediction 299 390 - -
Lele03g1621 492 MobiDBLite consensus disorder prediction 303 320 - -
Lele03g1621 492 MobiDBLite consensus disorder prediction 440 492 - -
Lele03g1621 492 SMART rrm1_1 229 297 IPR000504 GO:0003723
Lele03g1621 492 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Lele03g1621 492 MobiDBLite consensus disorder prediction 440 475 - -
Lele03g1621 492 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Lele03g1621 492 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Lele03g1621 492 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
Lele03g1621 492 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Lele03g1621 492 Pfam Torus domain 143 194 IPR032297 -
Lele03g1621 492 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 382 IPR039171 GO:0003723
Lele03g1621 492 MobiDBLite consensus disorder prediction 328 347 - -
Lele03g1621 492 CDD RRM_RBM22 227 300 - -
Lele03g1621 492 Gene3D - 149 210 - -
Lele03g1621 492 SUPERFAMILY RNA-binding domain, RBD 220 308 IPR035979 GO:0003676
Lele03g1621 492 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 287 IPR000504 GO:0003723
Lele03g1621 492 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Lele03g1621 492 Gene3D - 213 311 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1621 Lele-ChrLele03 10593465 10597657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1621 229 289 Eukaryotic Initiation Factors Gene Family AT1G49760 34.848 6.04e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1934 25 26998386 27006860 Lele03g1621 03 10593465 10597657 CCT
Lele26g1977 26 23181435 23193874 Lele03g1621 03 10593465 10597657 CCT
Lele27g0141 27 1108685 1119169 Lele03g1621 03 10593465 10597657 CCT
Lele28g1980 28 23009462 23021646 Lele03g1621 03 10593465 10597657 CCT
Lele01g1626 01 11331152 11336365 Lele03g1621 03 10593465 10597657 hybridization
Lele02g1985 02 23508916 23513102 Lele03g1621 03 10593465 10597657 hybridization