Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1579 ATGTTATGGTCAGCACCAAACCTTAGAAAATGTTTTCAAGAAGAATCTGTGGGGATGAAATTCTTTGTCATTGTATCTGAAATTGGTGTCCCTTTACCATATTTAATTGACTTTGAGCATCATAGGTCTTCTTCTGCACTCTACTTTCTCTCTCCCTTTCTTGGTTCGGGGCTTGGGATTTCACGTTTCTATGCCTCGAATCTTATTCTGTATTTAGATTCCTCTTCTTTCATTTCCCTCCCCAAATCCTTTGAAGCTGGTGAAAGAGAAAGGATGTCAAGTGGAGCAACACACTGGTGTTATGAGTGCGGACGGGCAATCGTACTTGAAGTGAGAGATTTCTCATGCCCCTATTGTGATGGAGGCTTTGTTATAGAACTTGATGAGATGCAAAGAACAGGACATATGGAAGATTTTCATCAAGTACCCGACATTTTTGGTGCTATTCATGCTGTTATGGGGAGGAGATTCCCAGAAACAAGATTTCTAGATTCAGTTGATAATATCCTGAGGCAGAGAATGGTCGGACGAAACCCAAACTTCAATGTTAGAGGTCAATCTATATCCGCGATGGGACCTGATCAGAGTTGGGGTTTCATTAGCTCCGGTCCTTACTTGATATTTCATGGTCAGGTTCCTGGATTCACTTTGACTAATGGCAACCCTAGAGGTGGTCCTAGGCGTGTCGATGTTAGTGACTATTTTAGGGGGCCTGGACTGGAAGAACTTATCGAACAGCTCACTATGAATGACCGGCATGGTCCGGCCCCAGCCTCACGTTCTTCAATTGATGCAATGCCTACCATAACAATCACACTGGCTCATCTTCGTTCTGACTCTGAATGTCCCGTTTGTCAAGATAAATTTGAACTTGGTTCTGAGGCGAGGGCAATGCCATGTAACCATATTTATCATTCTGACTGTATAGTCCCTTGGTTGGTTCAACATAACTCGTGTCCTGTTTGCCGTGTTGAGTTGCCACCTCATGGACAAGTCAGTGTCAGTCATCATGCTAGTCGTAATTTGGGAGGAAGTAATGCAGAAAGCACCAATAATGGTAGCCTTAGGGAGAGAGAGCAGAGCCAGCTGAACCAAGGAAGGAGAAATCCGTTTTCGTTTTTGTGGCCATTCCGTTCTTCTAGCTCAAACAGTAATAATAATCAATATGCTGAGACTAGAGGAAGCAACTCTTCAAACAGTCGTGACCAGAATAATGGAACGAACCAGAACCATAGCTGA 1239 0.435 MLWSAPNLRKCFQEESVGMKFFVIVSEIGVPLPYLIDFEHHRSSSALYFLSPFLGSGLGISRFYASNLILYLDSSSFISLPKSFEAGERERMSSGATHWCYECGRAIVLEVRDFSCPYCDGGFVIELDEMQRTGHMEDFHQVPDIFGAIHAVMGRRFPETRFLDSVDNILRQRMVGRNPNFNVRGQSISAMGPDQSWGFISSGPYLIFHGQVPGFTLTNGNPRGGPRRVDVSDYFRGPGLEELIEQLTMNDRHGPAPASRSSIDAMPTITITLAHLRSDSECPVCQDKFELGSEARAMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPHGQVSVSHHASRNLGGSNAESTNNGSLREREQSQLNQGRRNPFSFLWPFRSSSSNSNNNQYAETRGSNSSNSRDQNNGTNQNHS 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1579 412 MobiDBLite consensus disorder prediction 334 412 - -
Lele03g1579 412 CDD RING-H2_RNF126_like 281 323 - -
Lele03g1579 412 SUPERFAMILY RING/U-box 262 329 - -
Lele03g1579 412 ProSiteProfiles Zinc finger RING-type profile. 282 323 IPR001841 -
Lele03g1579 412 FunFam E3 ubiquitin-protein ligase RING1-like 246 329 - -
Lele03g1579 412 SMART ring_2 282 322 IPR001841 -
Lele03g1579 412 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 222 327 - -
Lele03g1579 412 Pfam Ring finger domain 281 323 IPR001841 -
Lele03g1579 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 329 IPR013083 -
Lele03g1579 412 MobiDBLite consensus disorder prediction 333 412 - -
Lele03g1579 412 Pfam zinc-ribbon 97 126 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1579 Lele-ChrLele03 10121205 10126691 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1579 226 327 C3H Transcription Factor Family AT5G01980 43.269 1.17e-22 98.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1582 01 10495397 10496362 Lele03g1579 03 10121205 10126691 hybridization
Lele02g1931 02 22792964 22793899 Lele03g1579 03 10121205 10126691 hybridization