Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1541 ATGATTCAGAAGAAAGATCTTATTGTTGTGGCTACCGCAAGGAGGTTGCCTTCTGATTCTGGCGCTTTTGCTGATTGGGCGGCTTCTTCTGCCGGGCGTGCTGCCCCCGCCGATGAGCTCTCCCTCGGCTTCAATGCTGGACCTGCCGCCGGGGGATCTGCCGCTGGTCCCACATCAGGAATGTGGTCTGGTGCTGCCTCCGCTGCGAGGTCGATCAATTACGGTTACTCACAGGAGATGGGAGGCATGCTCGGCCTCCGCGATCTCTACCTAGTGGCGCCGGCGTCGTCGTTTCACCACCACCACCACCACCATCATCACCAGGACCAGTCAGGCGTCATGACCGGTCCTCATTCGGAGAACAGCTCGAACCCCGCAACTGCTCTCGGCGTCGGCGCTATTCCTCTCACCGCCACATCGTGTCTTGGCCCGGCGAACATCACCGCCGAGAACAACGAGACAACTTTGATGAGTAATCGAAGCCGAGGTGGGGCAATTCAGCTTTGGCAGGACCAGGAGTCTGAACATGGTCATTATGTGAAGAAACAAGGTATTACGATGTTTGAGCTCAACGACAGTTCTGGGAATCTGGTTCAGAACGAGAACGGATTAACCGTCTCCGCAGCGAACAGCGGCGGCGGAGCAACGTGTCAGGACTGTGGGAACCAAGCGAAGAAGGATTGTAGCTACGGAAGGTGTAGAACTTGCTGCAAGAGTCGGAATTATGACTGCCCTACTCACGTGAAGAGCACGTGGGTGCCGGAGTCTCGGCGGAGAGAACGCCGTCTGATGGCCGCAGCGACCACTGCCGGTGGATCCACCGGTGCTACTTCTGGTGTCAAGAAACCTAGACTCGTCACATCACAACAACAAACCACAACAAACTCTCACACTTCCACATCTAATACCACTCCTCCTAGAAGCTTCGACACTGGTTCTAGCCACCAAGATGCAGGGTTTAAGGAATCACTACCGGGACAAGTCCGAGCTCCGGCGGTGTTCAAGTGTGTTCGGGTGACAGCGGTGGACGAAGCCGGGCAGGCTGAGTTTGCTTATCAGGCTACTGTCAAGATTTGTGGCCATGTTTTCAAAGGGTTTCTGTATGATCAAGGGGTTGAAAGTAGAGATGTGTATACGAATTTGTCGGAGCTTCATCTCGGCGGCGGTTTTGGCGCTGCCGGGAATGGTGGGAGGAATGGGGCTTCATCTTCATCACCAATGTTGAATCCTTCTGATGTATATGCAGCTTCAGGTGGAGGAGGTGGCTTACTTGGAGGAGGATCAACTTATGATCTTGTTTCTGTTCTTTCAGCTTTATTGATTTTGGTTCAGTACAAATTGGAAAGGAACTCAGCTTCTTTACACACTTAA 1371 0.5339 MIQKKDLIVVATARRLPSDSGAFADWAASSAGRAAPADELSLGFNAGPAAGGSAAGPTSGMWSGAASAARSINYGYSQEMGGMLGLRDLYLVAPASSFHHHHHHHHHQDQSGVMTGPHSENSSNPATALGVGAIPLTATSCLGPANITAENNETTLMSNRSRGGAIQLWQDQESEHGHYVKKQGITMFELNDSSGNLVQNENGLTVSAANSGGGATCQDCGNQAKKDCSYGRCRTCCKSRNYDCPTHVKSTWVPESRRRERRLMAAATTAGGSTGATSGVKKPRLVTSQQQTTTNSHTSTSNTTPPRSFDTGSSHQDAGFKESLPGQVRAPAVFKCVRVTAVDEAGQAEFAYQATVKICGHVFKGFLYDQGVESRDVYTNLSELHLGGGFGAAGNGGRNGASSSSPMLNPSDVYAASGGGGGLLGGGSTYDLVSVLSALLILVQYKLERNSASLHT 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1541 456 MobiDBLite consensus disorder prediction 270 320 - -
Lele03g1541 456 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 97 417 IPR007818 GO:0003700|GO:0006355
Lele03g1541 456 MobiDBLite consensus disorder prediction 267 323 - -
Lele03g1541 456 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 324 372 IPR006511 -
Lele03g1541 456 Pfam Domain of unknown function (DUF702) 214 373 - -
Lele03g1541 456 MobiDBLite consensus disorder prediction 112 126 - -
Lele03g1541 456 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 216 258 IPR006510 -
Lele03g1541 456 MobiDBLite consensus disorder prediction 100 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1541 Lele-ChrLele03 9682529 9685017 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1541 7 413 C2H2 Transcription Factor Family AT5G12330 47.170 2.67e-89 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lele03g1541 DUF702 4.3e-56 No_clan