Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1525 ATGGTTATAGTCCAGTCTTATCCAAATAACACCATTACTCAAATACTCTATAGTTTATATTTATTGAATAATGAAAAGAGTGGGAAGAACCAAAAACTCGGAGACGCAGTTTTCACAGACAGACCCCAAATTTATTTCTTCTCCGACCTGCCACCTGTTGTGCACTGTGAGACCCATGTTTTTCTCGCTTCTTACAACCACAATATCATCCCCTTCGCCTTGAATTCTTCTTCACTCCTCTCTCTCCATGTCGCTTTCGATCTTCCCGTTAAAACCTTCGCTCCCCTTCTACTCCGTTTTCAAACATTTCCTCGAAGATTCGCTCATTCGAAGTCGCTGAGAGCTCAGAAAGCGGGCCCTTCACTTTCTAACTATAAAAACTTCTGTTTCTGGTTCCTGCAGTGTCAAAATTCGCTTCAGTTCAGATTGGCCGTTTGCTTAGCCATGAATTTTCCTGGTTGGAATTTTGAGAACGATTCTTGTGTCTCCAATCAAAAGAAGCCCATGGGGCCGGACCAAGAACTTGTGGAGCTGATATGGCAAAATGGACAGGTAGTGATGCACACCCAAACGCCAAGAAAGCCAGCTGCGAATTCTATCGACTCGAGACAGTTCCAGAAACATGATCAATCAACAATCACGGCTAATGAGTCGTATGGGAACTCAAGTCATTTGATTCAAGAAGATGACGCAGTCTCATGGATTCAGTATCCACTTGAGGATCCATTGGAACAACAACTATGCTCAAACATTTTATCTGAACTGCCATCCTCTGGACTTGAGTCTGATAAGCCCATAAGGCAACTCAAAGAGGGAAAGTATGCCAAATTCGGCCCCTACAGTGCCTGCCATGTGCCCGCAAGTGCACAAACACCAAATATAAAGCCCTTTTCTCAGGAATTCTCAGGAAATCCTATGCCTGCTCCAAGAGTTCAGTTTCCTGATTCAACCCAGAAAAATATTAATTTTGGTGGATCAAATAATGTCCTCAATTTTTCTCAGTTTTCAGAACCCTCCAAAGTAGCCTCAACATATTCTAATGCACAGTGTGAAGATGAAGGTAATGGCAATCTGTTGCAAAACAAGGGCAAAGAGTGCTCAGTCATGACAGTTGGTTCAAGTCACTGTGGCAGCAACCAAGTCCCTCTAGATCCTGACATAAGCAGGGCATCAAGCATTGGGGTTTGGACTACTGCTTTATATTCTGAGCCTGAACCCCAGAGGGATGGTGTCCGGAAATCAATTCCTCAGAGTGAAAAAGGGAAGTCAGAGGTGGTTGAACCAACTTTGAGTTCATCATCAGATGACTCAGGTAGTCTTGCCAAAACTTGCTCCTGGTCTGAAAGAAGTCATGGCCAAAAAAGGAAAAAGATAGATACAGAAGAATTAGAGGAACAAAGTGAGGCCACAGAACCCAAATCGGCTGTTGAAAACAAGGCATCTCAGGGGACAAGGCCTTCCCGAAGGAATCGTGCAGCTGAAGTGCATAATCTCTCAGAAAGGAGACGAAGAGATCGGATCAATGAGAAGATGAGGACATTGCAACAACTCATACCTCATAGTAACAAGACAGATAAAGCATCGATGTTAGATGAGGCAATTGAGTACTTGAAGTCACTTCAGTTACAACTTCAGGTAATGTGGATGGGAGCTGGAATGGCACCAATGATGTTTCCCGGAATTCAGCACTATATGTCCCGAATGGGTATGGGAATGGCTTCGCCCTCTTTTCCTCCTATTCCCAATCCGGGGCAATTACCACGAACATCACTTGATCATTCCATGTCCATGGCTCAGACACCAAACCAGGGTTTGATGCGTCAAGCTCCTGTTATGAGTCCCTTTACTTATCAAAATCAGATGCAAAATCAAGCTCTCTCAGAGCAATACGCACGTTATATGGGGTATCAATTTATGCAAAGTGCCTCTCAGCCGATGAATGGATTTAATTATGGATCTCAAGTACAAAATAGTCAAACAATGATTCCACCCAGCAATAGCAGTGGACCTTGA 2013 0.4367 MVIVQSYPNNTITQILYSLYLLNNEKSGKNQKLGDAVFTDRPQIYFFSDLPPVVHCETHVFLASYNHNIIPFALNSSSLLSLHVAFDLPVKTFAPLLLRFQTFPRRFAHSKSLRAQKAGPSLSNYKNFCFWFLQCQNSLQFRLAVCLAMNFPGWNFENDSCVSNQKKPMGPDQELVELIWQNGQVVMHTQTPRKPAANSIDSRQFQKHDQSTITANESYGNSSHLIQEDDAVSWIQYPLEDPLEQQLCSNILSELPSSGLESDKPIRQLKEGKYAKFGPYSACHVPASAQTPNIKPFSQEFSGNPMPAPRVQFPDSTQKNINFGGSNNVLNFSQFSEPSKVASTYSNAQCEDEGNGNLLQNKGKECSVMTVGSSHCGSNQVPLDPDISRASSIGVWTTALYSEPEPQRDGVRKSIPQSEKGKSEVVEPTLSSSSDDSGSLAKTCSWSERSHGQKRKKIDTEELEEQSEATEPKSAVENKASQGTRPSRRNRAAEVHNLSERRRRDRINEKMRTLQQLIPHSNKTDKASMLDEAIEYLKSLQLQLQVMWMGAGMAPMMFPGIQHYMSRMGMGMASPSFPPIPNPGQLPRTSLDHSMSMAQTPNQGLMRQAPVMSPFTYQNQMQNQALSEQYARYMGYQFMQSASQPMNGFNYGSQVQNSQTMIPPSNSSGP 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1525 670 MobiDBLite consensus disorder prediction 473 488 - -
Lele03g1525 670 Pfam Helix-loop-helix DNA-binding domain 495 541 IPR011598 GO:0046983
Lele03g1525 670 SMART finulus 497 546 IPR011598 GO:0046983
Lele03g1525 670 MobiDBLite consensus disorder prediction 406 420 - -
Lele03g1525 670 CDD bHLH_AtPIF_like 491 554 - -
Lele03g1525 670 MobiDBLite consensus disorder prediction 489 505 - -
Lele03g1525 670 FunFam Basic helix-loop-helix transcription factor 486 549 - -
Lele03g1525 670 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 491 540 IPR011598 GO:0046983
Lele03g1525 670 MobiDBLite consensus disorder prediction 401 505 - -
Lele03g1525 670 MobiDBLite consensus disorder prediction 649 670 - -
Lele03g1525 670 Gene3D - 487 547 IPR036638 GO:0046983
Lele03g1525 670 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 488 555 IPR036638 GO:0046983
Lele03g1525 670 MobiDBLite consensus disorder prediction 448 472 - -
Lele03g1525 670 PANTHER TRANSCRIPTION FACTOR PIF3 160 659 IPR044273 GO:0003700|GO:0006355
Lele03g1525 670 MobiDBLite consensus disorder prediction 424 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1525 Lele-ChrLele03 9449667 9453977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1525 367 653 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G59060 40.000 1.39e-39 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele03g1525 HLH 2.3e-14 No_clan