Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1515 ATGATTTTATTGAGGTTGTTCGGTGTCTTGCTGGTAGCTGATGTCCTCAATGATTATCTTGGAGGTTTGAATGAAGACTCAATAAAAGACAACTTCGTTATTGTGTATGAGCTGCTAGATGAAATGATAGACAATGGCTTCCCGCTAACTACTGAACCTAATATCCTTCAAGAAATGATAGCTCCCCCAAATATTGTTAGTAAAATGTTGAGCGTCGTGACTGGCACCAGTTCAAATGTAAGTGACACCCTTCCAGGTGCAACAGCATCTTGTGTTCCCTGGAGAACAGCTGACACGAAGTATGCAAATAATGAAGTTTATGTAGATCTTGTTGAGGAAATGGATGCTATAATAAGCAGGGATGGTGTTCTGGTGAAATGTGAGATCAATGGCGAAGTTCAAGTAAATTCCCATATCACTGGTATTCCTGAGTTGACTCTTTCATTTGCAAATCCTTCTATTCTAGATGATGTGAGGTTCCATCGCTGTGTTCGATTTCAACCTTGGGAATCTCATCAATTTCTTTCCTTTGTGCCTCCCGATGGTCAGTTTAAGCTAATGAGTTACAGGGTCAGAAAATTGAAGAGCGCCCCAATATATGTGAAGCCACAGTTAACATCAGATGGGGGAACATGTCGTGTTAATGTATTGGTTGGAATACGAAATGATCCTGGAAAGACAATTGATTCAGTTACTATTCAGTTTACTCTTCCTCCTTGCATCCTATTAGCTGATCTCACTTCAAATCACGGAACAGTAAACATCCTTTCTGACAAGACATGCACTTGGTCGATTGGACGGATCCCAAAAGATAAAGCCCCATCAATGTCCGGGACACTTGTGCTTGAGAATGGATTGGAGCGCCTTCATGTTTTCCCAACATTTCGCGTTGGTTTTAGGATTATGGGCGTTGCCCTCTCTGGTTTACAAATAGATAAACTCGATCTCAAGAGCGTACCATACCGTTTCTATAAAGGCTTCCGAGCTCTAACGCGGGCAGGTGAATTTGAAGTCAGGAGTTATGGATTCTCTGATACCCAGATCTCTAAAATTGTGAAAAAGTATCCACGAGTCCTTTTGGCGAAACCTGAGGTGACACTTTCGCCGAAGCTGAGAGTACTTGGTGACTATGAGAAAGCAAATATAGCTTTGAAACGCTGGGGTAGATGCCATAAGGATGCAGACAATTTACTTTCAAACATAAAGGTTTTGAGAGAAAGTGGAGTGCCTCAATCTTCTGTCTCCCTGCTGCTTACTAATTTTTTGAGGGCTGCACTTAGAATGCCAGCAAAGTTTGTTGAGCTTGTCAAGTTCGCTAAGGAGATAGGAATCGATCCAACTAAGGCCGTGGATGCCACTCTTTCAGCATTTAGGAAGTTTCCACCTTGCATGCTGCTGTCAGAGGAAAAAATCACAAGCACAATGAAGTTTCTTGTGGATGAAATGGATTTGCCTTTAGTAGATATAGTTAATTTCCCAACAGTTCTTGGCTATAGCTTGAAGCAAAGGATTATTCCTAGATCCTCAGTTTTTAAAATTTTGAAAACCAATGGTTTGATAAATTGTGATAAGTCCTCTTCCATTGTCATCTTAAGTGAACAATAG 1605 0.41 MILLRLFGVLLVADVLNDYLGGLNEDSIKDNFVIVYELLDEMIDNGFPLTTEPNILQEMIAPPNIVSKMLSVVTGTSSNVSDTLPGATASCVPWRTADTKYANNEVYVDLVEEMDAIISRDGVLVKCEINGEVQVNSHITGIPELTLSFANPSILDDVRFHRCVRFQPWESHQFLSFVPPDGQFKLMSYRVRKLKSAPIYVKPQLTSDGGTCRVNVLVGIRNDPGKTIDSVTIQFTLPPCILLADLTSNHGTVNILSDKTCTWSIGRIPKDKAPSMSGTLVLENGLERLHVFPTFRVGFRIMGVALSGLQIDKLDLKSVPYRFYKGFRALTRAGEFEVRSYGFSDTQISKIVKKYPRVLLAKPEVTLSPKLRVLGDYEKANIALKRWGRCHKDADNLLSNIKVLRESGVPQSSVSLLLTNFLRAALRMPAKFVELVKFAKEIGIDPTKAVDATLSAFRKFPPCMLLSEEKITSTMKFLVDEMDLPLVDIVNFPTVLGYSLKQRIIPRSSVFKILKTNGLINCDKSSSIVILSEQ 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1515 534 PRINTS Clathrin coat assembly protein signature 262 273 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele03g1515 534 PRINTS Clathrin coat assembly protein signature 155 182 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele03g1515 534 PRINTS Clathrin coat assembly protein signature 25 52 IPR001392 GO:0006886|GO:0016192|GO:0030131
Lele03g1515 534 Gene3D Mu homology domain, subdomain B 197 336 - -
Lele03g1515 534 ProSitePatterns Clathrin adaptor complexes medium chain signature 1. 92 112 IPR018240 GO:0006886|GO:0016192|GO:0030131
Lele03g1515 534 Gene3D Mu homology domain, subdomain B 92 335 - -
Lele03g1515 534 ProSiteProfiles Mu homology domain (MHD) profile. 103 339 IPR028565 -
Lele03g1515 534 PANTHER AP COMPLEX SUBUNIT MU 11 339 - -
Lele03g1515 534 Pfam Adaptor complexes medium subunit family 92 339 IPR028565 -
Lele03g1515 534 SMART mt_12 454 485 IPR003690 GO:0003690|GO:0006355
Lele03g1515 534 SMART mt_12 349 381 IPR003690 GO:0003690|GO:0006355
Lele03g1515 534 SMART mt_12 486 520 IPR003690 GO:0003690|GO:0006355
Lele03g1515 534 CDD AP-3_Mu3_Cterm 92 339 - -
Lele03g1515 534 Gene3D - 7 67 - -
Lele03g1515 534 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 92 339 IPR036168 -
Lele03g1515 534 SUPERFAMILY SNARE-like 10 67 IPR011012 -
Lele03g1515 534 Gene3D Transcription termination factor 3, mitochondrial 337 534 IPR038538 -
Lele03g1515 534 Pfam mTERF 339 374 IPR003690 GO:0003690|GO:0006355
Lele03g1515 534 Pfam mTERF 458 526 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1515 Lele-ChrLele03 9352127 9360542 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Lele03g1515 Adap_comp_sub 2.9e-60 CL0448