Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1509 ATGGTTGATCCAGCATCATCATCTTACTTATCAAATGGGTCAAATAATCCCAACATATCTGCTTGCACTAGCCATGAGCATGTGGCAAATCTTGAGAATCTGTGCCTCAGTAAGCTGAGCGGAAGCCTTGAGAAGCTATTGATAGAAAATGAATATGACTATAGTGACGTTGAAATTGTTGTTGAGGATCAACATGTGGGTGTTCATAGGTGTATATTGGCTTCACGTAGTCAGTTTTTTCATGAACTTTTTAAGAAAGGAAATGATGGCTCAGTGAAGAAAGGTAGTAAGCCAAGGTATCTCATGTTAGACCTGCTGCCTTATGGCGTCGTTGGACATGAAGCATTCCGTGTTTTCTTGCATTATTTGTACACCGGAAAGATGAAGGCATCACCCACAGAAGTATCAACATGTGTTGATGAAACATGTGTACATGATGCATGCCGGCCTGCTATTAATTACGCTTTAGAGCTGATGTATGCTTCTGCTACATTTCGGATGAAAGAGCTTGTTTTACTTGTTCAGCGGCATCTCCTCAATTTTGTCGAGAAGGCTCTTGTAGAAGACCTGATTCCTATTCTTATGGCTGCCTTCCACTGCCAATTAGACCAGCTTCAGTCACACTGCATCCAAAGATTAGCAAGATCTGACCTTGAGAACACAACTTTGGAAAGAGAGCTCCCACCTGAAGTTTTTGGTGAAATCAAATCATTCCGACGCAAAGCTCTGGCAGAATCCACTCCTGATGCAATGGAAGTGGAGCCTTCAAATGAAAAAAGTATTAGGAGAATCCTTAAAGCATTGGACTCTGATGATATTGAGCTGATGACTCTTCTTTTGAAGGAATCTAGTGTCACTCTAGATGATGCTTATGCCCTACACTACGCCTGTGCCTATTGTGATTCTAAGATTGTTAAAGAAGTTCTTAATCTTGGGTTGGCTGACATAAACCATACAAATCCCCGAGGGTATTCAGTTCTCCATGTGGCCGCAAGGCGCAAAGATCCGACAATTTTAGTAGCGCTGTTGACTAAAGGGGCCTGTGTTGATTACAATGAGATAGCAGCGCAAGGGAAGGAATCTAACAAAGACAAGCTCTGTGTTGATCTCCTGGAGAGAGAAATGAGAAGAACTTCAATGTCTGTGAATGCATCTGTTTCATCAGAGTTAACTGCTGATGATTTGCACATGAGACTTGATTACCTGGAAAATAGAGTTGCTTTTGCCAAGCTATTGTTTCCTGCTGAGGCTAAGGTAGCCATGGATAATGCTGAGGCAGAGTCTACACTATATGCAAACCGATCGAGGGGCTCAAGTGGCAACCTAAGAGAAGTTGATCTAAATGAAACTCCTTCTGTGAGAACCAGAAAACTCCAGTTAAGATTGAAAGCCCTTTTGAAAACAGTTGAGAATGGCCGGCGCTTCTTTCCCCATTGCTCTGAGGTTCTTGATAAGTTTCTAGATGATGACATGCCCGATATCTTCTTCTTAGAGAAGGGTAGCGAACAAGAACAGAGAATGAAGAAGCAACGCTTCATGGAGCTAAAAGATGATGTTCAGAAGGCATTTCATAAGGATATGGCTGAAAACAACGGTTCAGGTTTTTCCTCCTCAGTTTCTTCCTCATCATCCTCATCTAAGAAAGGAGGTCTCAGCCAAAGAGTGAGGAAAAAGTGA 1677 0.4222 MVDPASSSYLSNGSNNPNISACTSHEHVANLENLCLSKLSGSLEKLLIENEYDYSDVEIVVEDQHVGVHRCILASRSQFFHELFKKGNDGSVKKGSKPRYLMLDLLPYGVVGHEAFRVFLHYLYTGKMKASPTEVSTCVDETCVHDACRPAINYALELMYASATFRMKELVLLVQRHLLNFVEKALVEDLIPILMAAFHCQLDQLQSHCIQRLARSDLENTTLERELPPEVFGEIKSFRRKALAESTPDAMEVEPSNEKSIRRILKALDSDDIELMTLLLKESSVTLDDAYALHYACAYCDSKIVKEVLNLGLADINHTNPRGYSVLHVAARRKDPTILVALLTKGACVDYNEIAAQGKESNKDKLCVDLLEREMRRTSMSVNASVSSELTADDLHMRLDYLENRVAFAKLLFPAEAKVAMDNAEAESTLYANRSRGSSGNLREVDLNETPSVRTRKLQLRLKALLKTVENGRRFFPHCSEVLDKFLDDDMPDIFFLEKGSEQEQRMKKQRFMELKDDVQKAFHKDMAENNGSGFSSSVSSSSSSSKKGGLSQRVRKK 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1509 558 Pfam BTB/POZ domain 50 132 IPR000210 GO:0005515
Lele03g1509 558 SMART BTB_4 55 182 IPR000210 GO:0005515
Lele03g1509 558 CDD BTB_POZ_NPR_plant 38 182 - -
Lele03g1509 558 Pfam NPR1/NIM1 like defence protein C terminal 349 542 IPR021094 -
Lele03g1509 558 Gene3D Potassium Channel Kv1.1; Chain A 20 215 IPR011333 -
Lele03g1509 558 Gene3D - 241 439 IPR036770 -
Lele03g1509 558 ProSiteProfiles BTB domain profile. 55 132 IPR000210 GO:0005515
Lele03g1509 558 PANTHER REGULATORY PROTEIN NPR3 9 349 IPR044292 GO:0009862|GO:2000022|GO:2000031
Lele03g1509 558 MobiDBLite consensus disorder prediction 523 558 - -
Lele03g1509 558 SMART ANK_2a 322 351 IPR002110 GO:0005515
Lele03g1509 558 SMART ANK_2a 288 318 IPR002110 GO:0005515
Lele03g1509 558 SUPERFAMILY Ankyrin repeat 257 350 IPR036770 -
Lele03g1509 558 Pfam Domain of unknown function (DUF3420) 217 265 IPR024228 -
Lele03g1509 558 Pfam Ankyrin repeats (3 copies) 271 349 IPR002110 GO:0005515
Lele03g1509 558 FunFam Regulatory protein NPR3 29 214 - -
Lele03g1509 558 ProSiteProfiles Ankyrin repeat profile. 322 354 IPR002110 GO:0005515
Lele03g1509 558 MobiDBLite consensus disorder prediction 530 550 - -
Lele03g1509 558 ProSiteProfiles Ankyrin repeat region circular profile. 322 350 - -
Lele03g1509 558 SUPERFAMILY POZ domain 37 180 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1509 Lele-ChrLele03 9319537 9325201 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele03g1509 NPR1_like_C 3e-81 No_clan