Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1460 ATGACGAGCATTGCAACCCACCAAAGCTCTCAGCCCATCACTTGCCACGCTTGGAGCCCTGACCAATCCATGATTGCCTTTTGTCCAAACAATAATGAAGTGCACATTTATGGATTGTTGGAAGACAAATGGGAAAAAACGCATGTTCTTCAAAAGCATGACCAAGTAGTTTGTGGGTTGGACTGGAGTAATAAATCAAACAAGATAGTTACTGCATCCCATGATCGCAGTTCATATGTATGGAACTTTGAAGGATCGGAATGGGTGCCAACTCTTGTTGTGCTTAGACTAAACCGCGCTGCTCTTTGTGTTCAGTGGAGTCCAAAAGAAAATAAGTTTGCAGTTGGAAGTGGGGCCAAAACTGTTTGTATATGCTACTATGAACAGGAGAACAACTGGTGGATGAGTAAACTCATCAGGAAAAGTCATGATTCTTCAGTGACAAATGTTTCATGGCACCCAAATAATATTCTTCTTGCAACAACATCTACAGATGGAAAATGCCGAGTGTTCTATACCTTCATAAAAGGTTGCTTCATAAATTGCTACAGGGATTCAACGACTCCAGAAACTAAATTTGGAGAGTTAATTGTTCAGCTTGATCTCTCCGTGTCCTGGACGTTTGGTGTCAAGTGGTCACCAAAGGGCACAACTTTAGCTTACGTAGGGCATAATTCGATTCTATATTTTGTTACTGACATTGGTCGTTCTCGTTCACCTGATACCCAAACTGTTCCTTATCGTGATTTGCCTCTCTGTGATGTTTGTTTTATTTCTGAGAATATGGTAATTGGTGTGGGATTTGACTGCGTCCCATTGGTTTTTGCCAAAGATGAAAGAGAAAAATGGAAATTCATCAGAAGTATTGGGGAAATGAGAGCAAGATCAGCTAGCTTAAAAGGATCACAGTATACCGATATATTTGGAAGATATATTGGTCGAGCCAGGGATGAAGTGACAGTTGAAGCAGAAAGTGGGGGCTCTCATGACAAGTGTATAAATTGTGTGTTGCCTGTCAGGGGCCGTGGGACATTGATAAAGCGTTTCAGCACATCAGGTTTGGATGGAAGAGTCATCATATGGGATTTGGAGAAGCAGCAAGACCTTGCTGCATACATTTTAGAACCCAAACAAGCATCCGCTGTCACTGTGTGTCACTGCAAAATGCTATCCGCACTTCAATCTCCTCGCTCCTTCTGTCGCTTCCCTCTCTTCCATTCCTCAAAGCCCTTCCTCTTCCATTCTTCTTCTCACGTTCTCCTCAATGCTTCCCTCACCGACCAATCTACCACCACCACTTCAACCTCCTCACCCCCAGAATCCCAAATCCTCACCACGCGCCACTCACTCCTCTCCCGCCACATCACCACCACGGAGCTCGCCGAGTCCTATCTAGCTCGCCTCCGACTCACCGAGCCCCAACTCAATTCCTTCCTCCACGTGTCCGATTCGGTTCTCCGAGAAGCTCAAGACTTGGATAGGAGAATCGCTAGCAATGAGGAAGTTGGCCCCTTGGCTGGGGTGCTTGTTGGGGTTAAAGATAATCTTTGTACGGCAGATATGCCTTCCACCGGTGGGTCCCGCATTCTCGAGGGGTACCAGCCACCGTTCGATGCTACGGCGGTGAAGAGAGTGAAGGAACTCGGGGGGATTGTAGTTGGAAAAACCAACATGGATGAGTTCGGTATGGGTAGCACCACCGAAGGCTCTGCGTTTCAGGTGACTGCCAACCCATGGGATATTTCTAGGGTGCCGGGAGGATCATCTGGAGGCTCAGCAGCTGCAGTTTCTGCCAGGCAGTGCATGGTATCACTGGGAAGTGATACTGGTGGAAGTGTGAGGCAGCCGGCATCATTTTGTGGAGTTGTAGGATTGAAGCCAACATATGGACGTGTCTCGCGATTTGGACTTATGGCATATGCATCATCACTCGATGTGGTTGGCTGCTTTGGTTCCTCAGTTGCGGATACTGGGATTCTCCTTCATGCAATCGCTGGTCATGATAGGTTTGATGCTACTACAAGTACGCAAGACGTGCCCAATTTTGTATCTCAATTTATCTCAGCAAGTTCCTTGGAAAGTAAGCCCTTGAAGGGACTGAGAATTGGTCTGATTCATGAAACTCTTGAAGATGGGGTTGAACCTGGAGTAGTTTCTGCAATTCGTGCTGCTGCTTTGCGTTTTGAGGAATTAGGATGCTCTGTTAATGAGGTCTCACTGCCATCCTTTTCCCTTGGGTTGCCAGCCTACTACATCCTTGCCTCATCAGAATCTTCTTCCAACTTGTCTCGCTATGATGCTATTAGATACGGAAAACAAGTTTTTGCTGATGAGCTGAGCTCTCTTTATGGAGATTCCCGTGCTGAAGGTTTTGGTTCTGAGGTCAAAATGAGAATATTGATGGGAACATATGCCCTTTCAGCTGGATATTATGATGCATATTACAAGCGTGCACAGCAGGTCAGGACCATAATTAGGAATAGCTTCAAGGAGGCATTAAGTCAAAATGATGTCCTAATTTCGCCTGCAGCTCCATCACCTGCTTATAAGATTGGTGAAAAGAAAAACGATCCTTTGGCAATGTATGCTGGTGACATCATGACTGTAAATGTTAACCTAGCTGGACTACCTGCTCTGGTTTTGCCATGTGGATTTGTTGAGGGGGGCAGTGCAGGCCTTCCTGTTGGTCTGCAAATGATAGGTTCAGCATTTTGTGAGGGAGAGCTGCTGAGAGTGGGCCATATCTTTGAGCAAACTCTTGAAAATTGTAACTTTGTTCCACCAATCATAGCTGATAACTGA 2802 0.4582 MTSIATHQSSQPITCHAWSPDQSMIAFCPNNNEVHIYGLLEDKWEKTHVLQKHDQVVCGLDWSNKSNKIVTASHDRSSYVWNFEGSEWVPTLVVLRLNRAALCVQWSPKENKFAVGSGAKTVCICYYEQENNWWMSKLIRKSHDSSVTNVSWHPNNILLATTSTDGKCRVFYTFIKGCFINCYRDSTTPETKFGELIVQLDLSVSWTFGVKWSPKGTTLAYVGHNSILYFVTDIGRSRSPDTQTVPYRDLPLCDVCFISENMVIGVGFDCVPLVFAKDEREKWKFIRSIGEMRARSASLKGSQYTDIFGRYIGRARDEVTVEAESGGSHDKCINCVLPVRGRGTLIKRFSTSGLDGRVIIWDLEKQQDLAAYILEPKQASAVTVCHCKMLSALQSPRSFCRFPLFHSSKPFLFHSSSHVLLNASLTDQSTTTTSTSSPPESQILTTRHSLLSRHITTTELAESYLARLRLTEPQLNSFLHVSDSVLREAQDLDRRIASNEEVGPLAGVLVGVKDNLCTADMPSTGGSRILEGYQPPFDATAVKRVKELGGIVVGKTNMDEFGMGSTTEGSAFQVTANPWDISRVPGGSSGGSAAAVSARQCMVSLGSDTGGSVRQPASFCGVVGLKPTYGRVSRFGLMAYASSLDVVGCFGSSVADTGILLHAIAGHDRFDATTSTQDVPNFVSQFISASSLESKPLKGLRIGLIHETLEDGVEPGVVSAIRAAALRFEELGCSVNEVSLPSFSLGLPAYYILASSESSSNLSRYDAIRYGKQVFADELSSLYGDSRAEGFGSEVKMRILMGTYALSAGYYDAYYKRAQQVRTIIRNSFKEALSQNDVLISPAAPSPAYKIGEKKNDPLAMYAGDIMTVNVNLAGLPALVLPCGFVEGGSAGLPVGLQMIGSAFCEGELLRVGHIFEQTLENCNFVPPIIADN 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1460 933 ProSitePatterns Trp-Asp (WD) repeats signature. 69 83 IPR019775 -
Lele03g1460 933 Hamap Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 446 921 IPR004412 GO:0006412|GO:0030956|GO:0050567
Lele03g1460 933 PANTHER TRANSAMIDASE 431 923 IPR000120 GO:0003824
Lele03g1460 933 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 50 84 - -
Lele03g1460 933 Gene3D Amidase signature (AS) domain 440 924 IPR036928 -
Lele03g1460 933 Pfam Amidase 459 910 IPR023631 -
Lele03g1460 933 Pfam WD domain, G-beta repeat 141 171 IPR001680 GO:0005515
Lele03g1460 933 Pfam WD domain, G-beta repeat 45 82 IPR001680 GO:0005515
Lele03g1460 933 ProSitePatterns Amidases signature. 586 617 IPR020556 -
Lele03g1460 933 ProSiteProfiles Trp-Asp (WD) repeats profile. 140 171 IPR001680 GO:0005515
Lele03g1460 933 SMART WD40_4 3 38 IPR001680 GO:0005515
Lele03g1460 933 SMART WD40_4 193 232 IPR001680 GO:0005515
Lele03g1460 933 SMART WD40_4 132 172 IPR001680 GO:0005515
Lele03g1460 933 SMART WD40_4 43 82 IPR001680 GO:0005515
Lele03g1460 933 SMART WD40_4 91 126 IPR001680 GO:0005515
Lele03g1460 933 SMART WD40_4 318 362 IPR001680 GO:0005515
Lele03g1460 933 Gene3D - 4 373 IPR015943 GO:0005515
Lele03g1460 933 SUPERFAMILY WD40 repeat-like 11 368 IPR036322 GO:0005515
Lele03g1460 933 SUPERFAMILY Amidase signature (AS) enzymes 443 928 IPR036928 -
Lele03g1460 933 TIGRFAM gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 449 921 IPR004412 GO:0006412|GO:0030956|GO:0050567
Lele03g1460 933 ProSiteProfiles Trp-Asp (WD) repeats profile. 50 91 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1460 Lele-ChrLele03 8911916 8923544 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1460 482 918 Acyl Lipid Metabolism Gene Families AT5G64440 29.204 2.60e-42 162
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1460 03 8911916 8923544 Lele03g1460 03 8911916 8923544 ECH
Lele01g1455 01 8995992 9012839 Lele03g1460 03 8911916 8923544 hybridization
Lele02g1764 02 21061341 21074074 Lele03g1460 03 8911916 8923544 hybridization