Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1429 ATGATACAAGCAGCAATATTCGTAATGAGGTTTAAGGAGATTATTTCTGTGTGTGTTGCAATGTCCACGACAGTTCTGGAACGAGTCGTTTTTGCTGCATTCATCTGCATTCTCGCTCTAGGAGGGTCAATAATGGGGACAATAGTGGGAGGGATGAAGGGACAGAGATCAGAAGCAGGGATACTTGATGGAGCTGGGAAAGGAGCAGTGTCAGGAGCCATTGCTGCTCTTGAATTGCTTGATCATTTTGTTGCTGATCATCATCATGAACCTATATCCAAGGTTGCCCTATTAAGCAGTTTATTCAATGGGAAGGTCCTAATGGAATGGGTATATCCAGCCTATCAATGGCATATTGGGATACCTGAAACAATCTACAGAGAAGTATCAGATATTTATGGTATGAGAGGAGTGCCAGGGTTGTCCCACAAATTGATTCAAACCCTCCCTTTGCATCAATTCAACCCCACACAAATGTTGGCTTCATACAATGAATCCTGCTGCTCCATTTGCTTCCTGGAGTTTGAGGATGGAGATTTGATAAGGAGGCTTCCAAAATGTGACCATATTTATCACTTTCACTGTATAGATAAATGGCTCATCCAACAAGGATCATGCCCTATGTGTAGAACTTATGTTCTTGACAATGATTTTGATGTCTAG 663 0.4193 MIQAAIFVMRFKEIISVCVAMSTTVLERVVFAAFICILALGGSIMGTIVGGMKGQRSEAGILDGAGKGAVSGAIAALELLDHFVADHHHEPISKVALLSSLFNGKVLMEWVYPAYQWHIGIPETIYREVSDIYGMRGVPGLSHKLIQTLPLHQFNPTQMLASYNESCCSICFLEFEDGDLIRRLPKCDHIYHFHCIDKWLIQQGSCPMCRTYVLDNDFDV 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1429 220 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 214 IPR013083 -
Lele03g1429 220 SUPERFAMILY RING/U-box 154 214 - -
Lele03g1429 220 CDD RING-H2_PA-TM-RING 167 210 - -
Lele03g1429 220 ProSiteProfiles Zinc finger RING-type profile. 168 210 IPR001841 -
Lele03g1429 220 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 16 211 IPR044523 -
Lele03g1429 220 SMART ring_2 168 209 IPR001841 -
Lele03g1429 220 Pfam Ring finger domain 168 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1429 Lele-ChrLele03 8680265 8683472 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1429 29 215 C3H Transcription Factor Family AT1G74410 34.010 3.73e-30 109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1429 03 8680265 8683472 Lele03g1429 03 8680265 8683472 ECH
Lele01g1427 01 8787909 8790030 Lele03g1429 03 8680265 8683472 hybridization
Lele02g1715 02 20687717 20689909 Lele03g1429 03 8680265 8683472 hybridization