Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1425 ATGTGCCGGGAAAGACTGCGGTACCTGGAAGCCATGGCAATTTACTCCGAGGCCACTGCAATGGTGGAGGAGTATCAGCAAGCCATTTCTGTGTCTAATCTTGGGGGAATTAGAGATACAGCAGGTCTATATCCACAACTTGGATTGAAGAACTCCCCTCAGGTTTATGAGACTTTAGAGCATCGAATGGTTGTGGCTGAAGCAGCTCAAAGACTGAGGCTTCCTCTTCTCTCCAAAGATGGTGAAGTTCATAAGGAAGATATTGAGAAGTTGAGCGTAGCATCTCGAAGCTCGCTTGACAGTACTAGTACCAGCGGCTCAAGCATTAATCCTAATCTTACCACTCCAAGTAGCTCGGTTGGAAGTGCTAATGCTGCTACAGATCCAGGAGAACTTGGTGTTGGTGGTGTCCCCAATCGTTTTCTTGGGATTACATCTGCTTATTTGTGGCAATCTCAGCTTCAACAAACACCGTTATCTGTGGTATACTATGACATGACAGAATATCGTATGTCTCTCTCTCGTGAGATAGAGGCTCGATTGAAGGTGAAATGTGATAAGTTAGCAGATGCCTTTGAACTGGATGACATTGATTCTTCACCGTCAGGAAGTCAAACTACAAGGCTTCCAGAAAGATTTGCTTTTAATGTTGATGAGCTGAATAATTTGGATTCAGTTCTGCTGGTTTCTTTACCTGTGGTGAAGTTGTTGATTGAGGAGATTGAAAGAGAAGAAGCAGCACTAAGGGACGACCTTTATTCTGCAGATAGAAAATTTGCTGAATATTATAATGATGAGCTGCAGAAGACTTGGCTTTGTAAGAGGTGTGAAACCATGAGTGCAAAATTGAGGGTTCTTGAACATGTTCTTCTGCTTGAAACTTACACTCAGGATTCTATACCTTCCCTTCATAAGATAAGGAAGTATCTTGTTGAGGCTACAGAAGAAGCTTCTATCGCATATAATAAAGCGGTTACTCGTCTCCGTGAGTATCAAGGTGTCGATCCCCACTTCGACAACATTGCAAGGCAATACCATGATATTTTGAAGCAGCTGCTTTCTGCGTTTTCTCGGTCCTCAACAGTTCACCAAACAAATTACATGGTTGATTTGGAAGTTCAGCTTCCCACTCCCTTCGATCCGTTCTTAGAAGCCAAAGAATCGGATGCTCCCGGAACCAAAGGGTATGTGCATGTCAGGATACAACAGAGGAACGGAAAAAAGAGTCTGACCACAGTTCAAGGACTGAAGAAAGAGTTCAGCTACGAGAAGATCCTCAAGGACCTTAAGAAGGAGTTCTGCTGCAACGGCAACGTTGTGCAGGACAAGGAGCTGGGCAAGATCATTCAGCTTCAGGGTGATCAGCGCAAGAACGTCTCTCAATTCCTGGTTCAGGCCGGTCTGGTGAGAAAGGACCAGATCAAGATTCATGGTTTTTAA 1440 0.4417 MCRERLRYLEAMAIYSEATAMVEEYQQAISVSNLGGIRDTAGLYPQLGLKNSPQVYETLEHRMVVAEAAQRLRLPLLSKDGEVHKEDIEKLSVASRSSLDSTSTSGSSINPNLTTPSSSVGSANAATDPGELGVGGVPNRFLGITSAYLWQSQLQQTPLSVVYYDMTEYRMSLSREIEARLKVKCDKLADAFELDDIDSSPSGSQTTRLPERFAFNVDELNNLDSVLLVSLPVVKLLIEEIEREEAALRDDLYSADRKFAEYYNDELQKTWLCKRCETMSAKLRVLEHVLLLETYTQDSIPSLHKIRKYLVEATEEASIAYNKAVTRLREYQGVDPHFDNIARQYHDILKQLLSAFSRSSTVHQTNYMVDLEVQLPTPFDPFLEAKESDAPGTKGYVHVRIQQRNGKKSLTTVQGLKKEFSYEKILKDLKKEFCCNGNVVQDKELGKIIQLQGDQRKNVSQFLVQAGLVRKDQIKIHGF 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1425 479 TIGRFAM SUI1_MOF2: translation initiation factor SUI1 373 479 IPR005874 GO:0003743
Lele03g1425 479 MobiDBLite consensus disorder prediction 94 127 - -
Lele03g1425 479 FunFam Eukaryotic translation initiation factor SUI1 369 479 - -
Lele03g1425 479 Pfam Translation initiation factor SUI1 394 467 IPR001950 GO:0003743|GO:0006413
Lele03g1425 479 PANTHER AUGMIN SUBUNIT 4 FAMILY MEMBER 1 353 IPR029327 GO:0051225|GO:0070652
Lele03g1425 479 SUPERFAMILY eIF1-like 367 479 IPR036877 GO:0003743|GO:0006413
Lele03g1425 479 Gene3D - 357 479 - -
Lele03g1425 479 Pfam HAUS augmin-like complex subunit 4 133 223 IPR029327 GO:0051225|GO:0070652
Lele03g1425 479 Pfam HAUS augmin-like complex subunit 4 265 352 IPR029327 GO:0051225|GO:0070652
Lele03g1425 479 CDD eIF1_SUI1 395 478 IPR005874 GO:0003743
Lele03g1425 479 MobiDBLite consensus disorder prediction 94 125 - -
Lele03g1425 479 ProSiteProfiles Translation initiation factor SUI1 family profile. 397 467 IPR001950 GO:0003743|GO:0006413
Lele03g1425 479 Coils Coil 238 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1425 Lele-ChrLele03 8646798 8653107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1425 368 479 Eukaryotic Initiation Factors Gene Family AT5G54940 80.357 1.21e-60 192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1425 03 8646798 8653107 Lele03g1425 03 8646798 8653107 ECH
Lele01g1424 01 8760159 8761132 Lele03g1425 03 8646798 8653107 hybridization
Lele02g1713 02 20669986 20670420 Lele03g1425 03 8646798 8653107 hybridization