LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele03g1402	ATGAGGAGGGTTAGAGGAGCAGCCGCTGTCAAACAGGCGGCGGCGATGACGGCGGCGGTTGAACTCAATGGATCCAGTTCAAGGGCCGTTTTAAAAGAGCCCAGGTACCGGGGCGTGAGGAAGAGACCGTGGGGTAGATTCGCCGCCGAGATCAGAGACCCCTTGAAGAAAGCTCGTGTCTGGCTAGGCACCTTTGATTCCGCCGAGGAAGCGGCTCGAGCCTACGACGCTGCGGCGATAGCTCTCCGTGGACCTAAGGCCAAGACCAATTTCCCCATCTCTTCTTCATTTTCGCCGTTCTGTTACCCCACCACCAACCCCAACGTCAACGACGATGTCTTAGATCACCGGTTGTACGTGAACAACGCTTTCCAGGAGCACCAGATTAACCCTCAGAGACCAGCCACCAGTAGCATGAGCAGCACATCTTTCAGCGGGCCACGGCCACCGTCTACGACGGCTCCGGTAGCAGTAAACCGGATATACCCCCGGACGCCGGCAGTCATGCCGGAGGATTGCCATAGCGACTGCGATTCCTCGTCTTCAGTGATCGACGGCGATGGATACGTCGAGGTCGCCGATTTAGCTTCCTCGTCGTTCCGTCAACCGTTACCTTTCGATCTCAACTTCCCACCGTTGGATGTCGAGAACGTGACTGGTGACGATCTTCACTGTACCGCTCTCTGCCTCTGA	693	0.5714	MRRVRGAAAVKQAAAMTAAVELNGSSSRAVLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAAIALRGPKAKTNFPISSSFSPFCYPTTNPNVNDDVLDHRLYVNNAFQEHQINPQRPATSSMSSTSFSGPRPPSTTAPVAVNRIYPRTPAVMPEDCHSDCDSSSSVIDGDGYVEVADLASSSFRQPLPFDLNFPPLDVENVTGDDLHCTALCL	230

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele03g1402	230	MobiDBLite	consensus disorder prediction	131	155	-	-
	Lele03g1402	230	PRINTS	Ethylene responsive element binding protein signature	36	47	IPR001471	GO:0003700\|GO:0006355
	Lele03g1402	230	PRINTS	Ethylene responsive element binding protein signature	58	74	IPR001471	GO:0003700\|GO:0006355
	Lele03g1402	230	ProSiteProfiles	AP2/ERF domain profile.	35	92	IPR001471	GO:0003700\|GO:0006355
	Lele03g1402	230	SMART	rav1_2	35	98	IPR001471	GO:0003700\|GO:0006355
	Lele03g1402	230	FunFam	Ethylene-responsive transcription factor 2	35	93	-	-
	Lele03g1402	230	MobiDBLite	consensus disorder prediction	131	152	-	-
	Lele03g1402	230	SUPERFAMILY	DNA-binding domain	35	94	IPR016177	GO:0003677
	Lele03g1402	230	Pfam	AP2 domain	34	84	IPR001471	GO:0003700\|GO:0006355
	Lele03g1402	230	Gene3D	AP2/ERF domain	35	94	IPR036955	GO:0003700\|GO:0006355
	Lele03g1402	230	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	25	184	-	-
	Lele03g1402	230	CDD	AP2	34	94	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele03g1402	Lele-ChrLele03	8471476	8472168	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele03g1402	1	230	AP2-EREBP Transcription Factor Family	AT3G20310	55.814	1.08e-53	171

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele03g1402		AP2	7.7e-16	CL0081