Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1401 ATGCTCTTCCCCTTTGATATTCAAAAGAGGAAAAAATTTGAAAAAAGAAAGAAAGATCACGATCTGTTTGTTACTCAAGAATTTTATGAAGTTGGGGTTTGTAGTGCCCAATGTGGGCGTTCATCCCCATTTTCTGCAGGTCCTTGTGTCTCTATCAGTAGATTTCTTTATCAGATTATGAAGGGGCTTGCGGTGGGGACAATGGCTAGCGAAGAGGAGAGACATCTGGAGACTCAACTAGAGCTTCAATTGCAGGAACAGAGGGATTCACTCTCTGCACTTAATGAGGCCTTGGTCTCTGATCCATCCAATTCCGAGCTTCTCGCTGTTCATGAGGAGCTTGTTCAGGCAATCAAAGATGCAGAGGAAGGGCTTCTTAACTTAAAGCGTACTCGATTATTGCATGAAGCAGATTCAGTGCTGAATAGATCCTATCTTTCTGCTCAAACAGAGGAAGTTGATTCACTTGACCCTGCAGATGTTGAACTAGAACCTCTAGAGGAACCACATTATTCTGCTGGATCTAAATGTAGATTCCGTCACACCGATGGGCGTTGGTACAATGGTCAAGTAGTGCAGTTAAATAGTTCTTCAGCAAAAATTTCATTCCTTATGCCTACGTCTGAGAATATGCTGATGTGCAAGTTTTTTCTGCAACAACGATGTCGGTTTGGTACTAACTGTCGTCTATCACATGGTATCGATGTTCCACTGTCTTCCCTCAGAAAATATGTTCCTACCATCTGGAAGCAGTCCCTGGTTGGTTCAAGTATATGGGCAGTCTCAGATGTTAATGCTGGCATTTGGAAGGTAGCTGAGCTTGAATCCTGGGATGAAGGACTTGGAGTTGGACTAGCTGTTTTCCGAGATGATGGAAGTTCTGTGAAGTTAGGAGCAGAAGCTATGGCATTATCTGAATGTGCAGAAGTGAGTGATGAAGAGAGGGATTCCAGCTCGGAACAGTCCGATTTTAGTGACTATGAAGAAGATGACCCACAAGGTGTAGGCTTTCTGGAAAGCACCAACCTACAGCGGGGTATTCAGACTGAAACTGCTATATTTGCAAAGTGGGAGAATCACACCAGGGGTGTAGCTTCCAAAATGATGGCTAATATGGGTTACAGGGAAGGTATGGGTCTAGGTGTTTCTGGTCAAGGAATGCTTAATCCTATCCCAGTGAAGGTCCTCCCACCAAAGCAATCCTTAGATCATGCTCTTCAATCTCATAAAGATAAAGGAGAAGAGAGCAAAGACAATCGAGGTAAGAGACGAAGTAGAGGTGGTAAGAGAAAACGCGATAAGAAATTTGCAGAGGCGATTCGGGTAGCAAAAGAAGAGGAGGAATCAGTATCGGATGTGTTCGCACTAATAAATAATCAGCTGGCAGTGCATAGTGCAGCTATGAATGGTGGATCAGTGACGAAGCAGCAAAGTAAAGGTTCGGGAGAAGGCAAAAAAGTTGATAGGCGGGCTTTGATTGCTTATGAGGACGAGGTAAAGGACTTGAGGATTCGGGTTGAGAAGCTTGAAGAAATGGTGAATAGAAACAAGAAAGAGAAGGTAGTTTACGAGGCCGCCATGAGAAAGTTAACCGAAACCCGCAAGGCTTTAGCAGAGGCAGAAGCAGCCCATGTCTCCGCGTCAAACGCAGTTGTTACCAAAGAAAAAGAGAAGAGATGGCTTAAGTTTTAG 1692 0.4403 MLFPFDIQKRKKFEKRKKDHDLFVTQEFYEVGVCSAQCGRSSPFSAGPCVSISRFLYQIMKGLAVGTMASEEERHLETQLELQLQEQRDSLSALNEALVSDPSNSELLAVHEELVQAIKDAEEGLLNLKRTRLLHEADSVLNRSYLSAQTEEVDSLDPADVELEPLEEPHYSAGSKCRFRHTDGRWYNGQVVQLNSSSAKISFLMPTSENMLMCKFFLQQRCRFGTNCRLSHGIDVPLSSLRKYVPTIWKQSLVGSSIWAVSDVNAGIWKVAELESWDEGLGVGLAVFRDDGSSVKLGAEAMALSECAEVSDEERDSSSEQSDFSDYEEDDPQGVGFLESTNLQRGIQTETAIFAKWENHTRGVASKMMANMGYREGMGLGVSGQGMLNPIPVKVLPPKQSLDHALQSHKDKGEESKDNRGKRRSRGGKRKRDKKFAEAIRVAKEEEESVSDVFALINNQLAVHSAAMNGGSVTKQQSKGSGEGKKVDRRALIAYEDEVKDLRIRVEKLEEMVNRNKKEKVVYEAAMRKLTETRKALAEAEAAHVSASNAVVTKEKEKRWLKF 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1401 563 Coils Coil 111 131 - -
Lele03g1401 563 SMART G-patch_5 359 405 IPR000467 GO:0003676
Lele03g1401 563 SUPERFAMILY CCCH zinc finger 209 233 IPR036855 GO:0046872
Lele03g1401 563 ProSiteProfiles Zinc finger C3H1-type profile. 208 235 IPR000571 GO:0046872
Lele03g1401 563 MobiDBLite consensus disorder prediction 402 435 - -
Lele03g1401 563 Pfam G-patch domain 361 403 IPR000467 GO:0003676
Lele03g1401 563 MobiDBLite consensus disorder prediction 308 322 - -
Lele03g1401 563 Gene3D - 187 245 - -
Lele03g1401 563 ProSiteProfiles G-patch domain profile. 361 407 IPR000467 GO:0003676
Lele03g1401 563 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 22 68 563 - -
Lele03g1401 563 Coils Coil 68 97 - -
Lele03g1401 563 Coils Coil 492 543 - -
Lele03g1401 563 MobiDBLite consensus disorder prediction 308 341 - -
Lele03g1401 563 Pfam CCCH-type zinc finger 213 233 IPR041367 -
Lele03g1401 563 MobiDBLite consensus disorder prediction 404 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1401 Lele-ChrLele03 8462822 8471286 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele03g1401 G-patch 5.5e-12 CL0449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1395 01 8559401 8563455 Lele03g1401 03 8462822 8471286 hybridization
Lele02g1682 02 20480188 20484223 Lele03g1401 03 8462822 8471286 hybridization