Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1389 ATGCCGTTGGAGTTGTGTGAAGGGCTCGCTCCCAAGGATATTGCTGCGAGAGAAGAAGCTATGGAGACTGTGATTGAGGACCTTGGATTGAAGACGAAGATTAAAGTTCAGAGACTAACGACGGAACCTGGAAATTTGTCTATCATGCACCACCAGCCATTGCAGAGCAAGAACATTATATGCCGTCTCACTGCCAATAAAGTAGATACTGTGCTTGTTTGTGAGGCTTGTGAAAAAGGGTTTCACTTCAAATGTTTGCATCCATCCCTGTTCGAAAAAACTCCAAGAGATGAGTGGCACTGCACGAAGTGCTTGATTTTAAGCGGTGAAAAGCCTTTACCTCCAAAATATGGTCGTGTCGTGAGGTTCTCGAACACTAAATCAAAACTACCCTGTAACACAGATAAGAACACTGGTGTTGCAGTTCAAGAGCTTGCTAAGCACCTCACATGGCCTCCTCCATCAAGGGATTATATGAATCGGGCATTTACTTGCCAGATTTGTGATCTTACTGTCTATGAAGTTGACACTGTGCTTCTTTGTGATGCTTGTGAAGATGGGTTTCACTTGAAGTGTTTGCAATTGCAGCCATCATCATCATCATCACTCTTGAGAGGAATACCTAGAGGTGGAGTCCAACCATACTTAGAGAAGAAAACTGGAGTTGCAGTTCCAAAAGTCAGCTCGCAGGAGTTATCAACAAATAGTTGCTCTGGTTCAACCTATTCCTACTACCAACAACAAAAACCACTTCTTCTTGTAGTCCTTTTGTTGGCTCTGCTTAACAAACAATTTCTGAGGCATCTACCTGCAAAAGAGAGAATCTTTGGTTCAGAATCAGAAGTGCTTCCTCATTTAACTGAGGTGTCGGTCATGGAATTGGCGATGGTTTCTGAGGTAACGGAACCGCCGGAGGAGACGCTATCTGAGGGCTTGCCGGTGAAAAGGCCGGTTGAGAATGGTGGGGGTGAGGAATTGGCCAAGAAGCCTAAGGTTGAAGCAGCTGCTGATACTGTGTCTGGCGGGGAGTTGAAGAGAGTGGCGGAGATTGTGCTGGTTTTGTCGACGATGGCGGCAATGCGAGGTGGGAAGAAGCCCACTAGTGTGGAGATTGAGTTGATGAAGGAGGCAAGGAAGAAGTTGGTGGAGTTATGTCAAGTGATGGCCCCCAAGGATATTGTGGCGAGGGAAGCTGTGGGGGCAGTGATGGAGGATCTGGGATTGAACGGGAAGACTAAAGATCAGAGATTAGGGTTTCAAACTCCAAAGATGTCTATAACCGAAAGGTTCGCACTCTCCAAGATGAAGCCATTGCAAACAAGCATGGGTGGTGGAATGGTTGAAAATCGTATGCCATCTCATACTGTTCGAATGTTTCCCATGGACAAATCAAGCCACACAGGATTCTCTCCTTCTGGTACCATAACTTCTCCTCCTGTGATTCATGTTTCTGCAGGATCATCTGCTGCTTTGCAATATCAATCAACTACTAGTGGAGTAAAATCACCTATAGTTTCTGGTGGAATGTCTAGCAGTCACTTGGGTAGAAATTCGTCTTCATTAGCATTGCCTAAAGTTGAACAACCACAGTTCAAAGTTGATGGAGGATCAAGTGGGCCTTATTTGTTGCATGCTCAAGACTTGGATTTTCCTTTTATATGTTGTGAACTGGTTATGTTTGCAAAATTCTCAGCAGCATCTTCGAAAAACATAAATATGCCTGCCCAAAGTACACCAGAAAACAAAGGGACTGGACATAACCCTGTCAAGGTTGAGGGAATGGGTGACCTAACTGGGCCCAGAGGTGCTTCACAAATAGCAAGGGATCAGGGCTATAGACCCTTAGTAACTCAAACAATGCCTGGAAATTTGTCTAGCTTGCACCAGCCATTGCAGGGCATGAACATCGTTCAGCCTCCTTCAATTCCTAATAATCATGCTGAAATTGCAAAGATTGTCCAGAAACTGTTACAACCAAAGCTTCCTGAGCATCCCACATGGACTCCTCCATCAAGGGATTATATGAACAAGGCATTTACTTGCCAGATGTGTGATCTCACTGTTAATGAAGTGGATACTGTGCTTCTTTGTGATGCTTGTGAAAAAGGGTTTCACTTGAAGTGTTTGCAGCCATCACTTCTGAGAGGAATTCCTAGAGGTGAGTGGCACTGCATGAGGTGCTTGACATTAAGCGGTGGAAAGCCTTTGGCTCCAAAATATGGTCGTGTCATGAGGTCTGCGAACACTCCACCAAAACTTCCCTCTAACACAGGTGGAGTCCAACCATCCTTAGAGAAGAAAACTGGACTTGCAGCTCCAAAGGTCAGCTCACAGGAGTTAACAATAAATGGAGGCTTTGTTTCAACTGATGCCGCCAGTAACAATAAAAATGCTGAGCTTCTATCTGTCTCAAAGATGCCTGATACAAAAGAAATGCAAGATAACACTCATTCATCCAGCAGCAAACACATGGATGAGAAGCCTGACCCAAATATCTCAATAAAATCCCTTAGTTCAGCTTCTAGTCCTGCTGTTGGCTTTCAAGGTGAAAGTTCTGCGGAACAAATAATTTCTGAGCCATCTACGTCTAAAGAGAGAACCTTTGCTTCAGAATCAGAAGTGCTTCCTCAATTAACTGAGTCAGTTATACCTAACAATTTGCAATTGTCAAAAAATGTACAAGTTGAACTGACACCACTACCAAACAATGTTGAAGTTTCATTATATAAACATGTTGGCAATAGTTTGACTCATGGGGGAGAAAATTTAATATATGATATCAAACGCGAGGACCAATATGTTGCACTAGCAAATTCTGATAAAAGTTCTGGAACTCATGCTGAAGGTAGACAATGTACTGCATCATCTTCAGATGGCTTACATGCGGTAGAGTGGGTTGGTGATATTGTACAACTTGTTGATGAGAAAAGGTTTTATCAATCTTGCCGTGTTAATGGAGTTACATATAGGTTGCAGGATCATGCTCTTTTTAAATCCAGTCATGGCAAGTTAATTCCATCTAAACTGCAGTCTATGTTTGAAGATAGCAAAACTGGGTTGAAGTGGGTAAATGTGACAAAGTGCTACTTTCCTGGTGATTTACCAGGGAATATCCCTCACCCATGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTGGCTCCATTCAAGGACCCTGTGAAGTCCTCCCGTCTCTTAAATTTCAACAAGAAAACAATAAACGAAGAGGGTTAGAACCTGAGGAAAGTGCTAGACTTCAGCCAATTTTCCTATGCAGATGGTTCTATGATGGAGTCAAAAAATTATTTCAGCCTGTTACCAGTTGA 3348 0.431 MPLELCEGLAPKDIAAREEAMETVIEDLGLKTKIKVQRLTTEPGNLSIMHHQPLQSKNIICRLTANKVDTVLVCEACEKGFHFKCLHPSLFEKTPRDEWHCTKCLILSGEKPLPPKYGRVVRFSNTKSKLPCNTDKNTGVAVQELAKHLTWPPPSRDYMNRAFTCQICDLTVYEVDTVLLCDACEDGFHLKCLQLQPSSSSSLLRGIPRGGVQPYLEKKTGVAVPKVSSQELSTNSCSGSTYSYYQQQKPLLLVVLLLALLNKQFLRHLPAKERIFGSESEVLPHLTEVSVMELAMVSEVTEPPEETLSEGLPVKRPVENGGGEELAKKPKVEAAADTVSGGELKRVAEIVLVLSTMAAMRGGKKPTSVEIELMKEARKKLVELCQVMAPKDIVAREAVGAVMEDLGLNGKTKDQRLGFQTPKMSITERFALSKMKPLQTSMGGGMVENRMPSHTVRMFPMDKSSHTGFSPSGTITSPPVIHVSAGSSAALQYQSTTSGVKSPIVSGGMSSSHLGRNSSSLALPKVEQPQFKVDGGSSGPYLLHAQDLDFPFICCELVMFAKFSAASSKNINMPAQSTPENKGTGHNPVKVEGMGDLTGPRGASQIARDQGYRPLVTQTMPGNLSSLHQPLQGMNIVQPPSIPNNHAEIAKIVQKLLQPKLPEHPTWTPPSRDYMNKAFTCQMCDLTVNEVDTVLLCDACEKGFHLKCLQPSLLRGIPRGEWHCMRCLTLSGGKPLAPKYGRVMRSANTPPKLPSNTGGVQPSLEKKTGLAAPKVSSQELTINGGFVSTDAASNNKNAELLSVSKMPDTKEMQDNTHSSSSKHMDEKPDPNISIKSLSSASSPAVGFQGESSAEQIISEPSTSKERTFASESEVLPQLTESVIPNNLQLSKNVQVELTPLPNNVEVSLYKHVGNSLTHGGENLIYDIKREDQYVALANSDKSSGTHAEGRQCTASSSDGLHAVEWVGDIVQLVDEKRFYQSCRVNGVTYRLQDHALFKSSHGKLIPSKLQSMFEDSKTGLKWVNVTKCYFPGDLPGNIPHPCISEVNEVYESNSDRTEMAGSIQGPCEVLPSLKFQQENNKRRGLEPEESARLQPIFLCRWFYDGVKKLFQPVTS 1115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1389 1115 MobiDBLite consensus disorder prediction 810 830 - -
Lele03g1389 1115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 203 IPR013083 -
Lele03g1389 1115 CDD BAH 986 1114 - -
Lele03g1389 1115 ProSiteProfiles Zinc finger PHD-type profile. 678 730 IPR019787 -
Lele03g1389 1115 SMART PHD_3 60 105 IPR001965 -
Lele03g1389 1115 SMART PHD_3 164 238 IPR001965 -
Lele03g1389 1115 SMART PHD_3 680 728 IPR001965 -
Lele03g1389 1115 MobiDBLite consensus disorder prediction 802 832 - -
Lele03g1389 1115 ProSitePatterns Zinc finger PHD-type signature. 681 727 IPR019786 -
Lele03g1389 1115 SUPERFAMILY FYVE/PHD zinc finger 671 734 IPR011011 -
Lele03g1389 1115 MobiDBLite consensus disorder prediction 302 330 - -
Lele03g1389 1115 MobiDBLite consensus disorder prediction 749 763 - -
Lele03g1389 1115 MobiDBLite consensus disorder prediction 743 775 - -
Lele03g1389 1115 SUPERFAMILY FYVE/PHD zinc finger 157 198 IPR011011 -
Lele03g1389 1115 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 307 1114 - -
Lele03g1389 1115 Gene3D - 966 1115 IPR043151 -
Lele03g1389 1115 ProSiteProfiles BAH domain profile. 987 1114 IPR001025 GO:0003682
Lele03g1389 1115 Pfam PHD-finger 60 104 IPR019787 -
Lele03g1389 1115 Pfam PHD-finger 681 728 IPR019787 -
Lele03g1389 1115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 670 742 IPR013083 -
Lele03g1389 1115 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 111 IPR013083 -
Lele03g1389 1115 SUPERFAMILY FYVE/PHD zinc finger 59 111 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1389 Lele-ChrLele03 8386250 8393065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1389 691 772 C2H2 Transcription Factor Family AT3G01460 31.034 3.52e-06 49.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele03g1389 PHD 1.4e-08 CL0390