Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1387 ATGCTTATCAAGCAATCGCATCGACACGAAAAACGACGCGGCGGGGATAGAGCATTTTCAACGGCAAGGCTTCATAGTTGTGCGAGGCTTGCTGTAATGTCTACATGGCCAATGGCATCATCTTCTGACTCATGGATGAAGGAATATAATGAAGCCGTGAAACTTGCTGATGATATCGGTGGCATGATTTCCGAACGGAATTCATTTCCTACATCTGGACCTGAAACCCAGCGCCATGCATCTGCTATAAGAAGGAAGATAACAATATTAGGGACCAGACTTGATAGCTTGCAATCCCTTTTGTCAAAGCTTCCTGGGAAACAGCCTATATCTGACAAGGAGCTGAATCGGCGTAAGGACATGATTGCAAATTTGAGGTCAAAAGTTAACCAAATGGCATCAACATTGAATATGTCTAACTTTGCAAACAGGGATAGTTTGCTTGGACCAGATACAAAACCTGATGCCATAACCAGAACAGTTGGCTTGGATAACGGGGGACTTGTTGGACTCCAACGCCAAATTATGAGAGAGCAAGATGAGGGCCTTGAGAAATTGGAGCATACTGTAACAAGTACAAAACATATTGCATTGGCTGTAAATGAAGAACTGGATCTACACACTAGACTCATTGATGACTTGGACCAGCATGTAGATGTTACAGATTCTCGGCTGCGGAGGGTTCAAAAGAACTTGGCAATTTTGAACAAGCGTACCAAGGGTTGTTGCACCTGCTTGTGTTTGCTTTTATCAGTTGTTGGTATAGTGGTTTTGGTTGCTGTTATATTGCTGTTGATCAAATATTTGTAA 810 0.4272 MLIKQSHRHEKRRGGDRAFSTARLHSCARLAVMSTWPMASSSDSWMKEYNEAVKLADDIGGMISERNSFPTSGPETQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISDKELNRRKDMIANLRSKVNQMASTLNMSNFANRDSLLGPDTKPDAITRTVGLDNGGLVGLQRQIMREQDEGLEKLEHTVTSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGCCTCLCLLLSVVGIVVLVAVILLLIKYL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1387 269 Pfam SNARE domain 210 260 IPR000727 -
Lele03g1387 269 PANTHER SYNTAXIN 68 254 IPR045242 -
Lele03g1387 269 CDD SNARE_Qc 176 233 - -
Lele03g1387 269 SMART tSNARE_6 168 235 IPR000727 -
Lele03g1387 269 SUPERFAMILY t-snare proteins 66 137 IPR010989 GO:0016020|GO:0016192
Lele03g1387 269 Gene3D - 175 237 - -
Lele03g1387 269 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Lele03g1387 269 SUPERFAMILY SNARE fusion complex 164 234 - -
Lele03g1387 269 FunFam syntaxin-51 isoform X2 175 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1387 Lele-ChrLele03 8373682 8376454 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1387 29 269 SNARE and Associated Proteins AT1G79590 71.605 8.35e-122 346
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1387 03 8373682 8376454 Lele03g1387 03 8373682 8376454 ECH
Lele01g1376 01 8463736 8465580 Lele03g1387 03 8373682 8376454 hybridization
Lele02g1657 02 20316221 20318991 Lele03g1387 03 8373682 8376454 hybridization