Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1386 ATGAGTGCAGTTCCGAAAGAGTCAATTGAACTCATTGCGCAGAGCATTGGCATCTACGATTTGTCCCCTGATGTCGCTCTCGCTCTTGCTCCCGATGTGGAGTATAGGCTTCGCGAAATTATGCAGTGGATGACATATCTCTTTGTTCATTCTCAATGTTCAAAGCGAACTGTTCTTACGTCAGATGATGCGGATAGTGCACTTAAATTAAGAAATCTGGAGTTGGGAGCCTATCAAACTGTGGTGGTACACCTACAAAAGGGTCTTATTTGTTATCGTAAAGATGCCATGTCTATGCCAGTATTACCGATATATGGTTTCACCTCTAAGGATCCTCTGCGGTTCAAAAGAGCTGCTGGACACAAGGATTTGTTCTACGTGATTGAAGCACCACTGCCAAAAGCACCTCTTGATACATCAGTTACCCATCATTGGCTGGCAATTGAAGGTGTACAGCCTGCAATCCCTGAAAATGCTCTCATTGTAGCTCCCTCTGAAACAAGAAAATCTGACTATAAGGAAGAACTTCCTGTTGATATTAAATTACCTGTTAGACATGTACTTTCAAGAGAGCTTCTGTTTTACTACCACAAAATAACTGAGCTGATATCAAACAAGCCAAGCACCATTCTCTTGAATAGAGCATTAATTAGCTTGGCAACTGATTCAGGGTTCCATCCTTTGATTCCTCATTTCTCATACTTTGTTGCTGGTGAGAAACTTCAGTGCAAACCTGGTTGCTTCAATATGCAAAAGGTGGGGGACCTTTTGTCTGAATTTGGGCATGTTTATCATAATAACCTTCAGCCACGTGTGACAAAGACATTGCTTCATGCTTTCTTGGACCCTACAAAATCTCTACCTCAACATTATGGTGCAATTAAAGGGATAGCAGCTCTTGGATCCAGCATGGTTCTCATGCTTATACTTCCAAATCTTGAGGCAGATCTGCTTCTTCTTGAACCAGAAATGCAACTTGTGAAGCAAAAAAACGCATTAAATAGGCATGAAGCTTGGCAAGTTTATGGAGCATTGCTGTGTGCAGCAGGCCAATGTATTCATGAACGGGCCAAAGTGTACAGCCGTATGCTCTCTCCTGCTTCTATTCGTGTTTTTTCAAGAGGCTATGGAAAAGTCATGATAGCAACTCCAAAACTAACTTTTTCCATCAATTTTGTTGCCTCATTCGGTACTCAAAATTGCAAACGTAAAGCCATCACAGACAATCTAATGCAGCAACCACCACTGAAGAAAATTGCAACAGATGTTTCTGGGGGTTTGATACCAATGAACTCCTTGCCGGTTGATATGCAAATGCAAGGCACGCCAGGTGGATTTTCCAATACAATGGGAGTTCCTAACGTGGGCATGTCCTCAATGGCTCGTCAGTTATTAAATGAAAAGAATCCAGGAAGAGAGGTTGGAGGTCAACAAGGTAAGGTATCAGCAACTCTTGCTCAGGCTTGGAAGGATGACATCGATTCCGGACATTTGCTATCATCTGTGCATGAACTATTCGGCCATGGTGTTTTCTCCTTTATTCCAAAAGCTGAAGAATCTATATTCTTGTGA 1572 0.4211 MSAVPKESIELIAQSIGIYDLSPDVALALAPDVEYRLREIMQWMTYLFVHSQCSKRTVLTSDDADSALKLRNLELGAYQTVVVHLQKGLICYRKDAMSMPVLPIYGFTSKDPLRFKRAAGHKDLFYVIEAPLPKAPLDTSVTHHWLAIEGVQPAIPENALIVAPSETRKSDYKEELPVDIKLPVRHVLSRELLFYYHKITELISNKPSTILLNRALISLATDSGFHPLIPHFSYFVAGEKLQCKPGCFNMQKVGDLLSEFGHVYHNNLQPRVTKTLLHAFLDPTKSLPQHYGAIKGIAALGSSMVLMLILPNLEADLLLLEPEMQLVKQKNALNRHEAWQVYGALLCAAGQCIHERAKVYSRMLSPASIRVFSRGYGKVMIATPKLTFSINFVASFGTQNCKRKAITDNLMQQPPLKKIATDVSGGLIPMNSLPVDMQMQGTPGGFSNTMGVPNVGMSSMARQLLNEKNPGREVGGQQGKVSATLAQAWKDDIDSGHLLSSVHELFGHGVFSFIPKAEESIFL 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1386 523 SMART TAF_cls 2 71 IPR004823 -
Lele03g1386 523 CDD TAF6C 185 348 IPR011442 GO:0006367
Lele03g1386 523 SUPERFAMILY Histone-fold 2 69 IPR009072 GO:0046982
Lele03g1386 523 Gene3D Histone, subunit A 1 70 IPR009072 GO:0046982
Lele03g1386 523 Pfam TATA box binding protein associated factor (TAF) 1 69 IPR004823 -
Lele03g1386 523 Pfam TAF6 C-terminal HEAT repeat domain 254 313 IPR011442 GO:0006367
Lele03g1386 523 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6 2 237 IPR037796 GO:0000124|GO:0005669|GO:0006367|GO:0016251|GO:0046695
Lele03g1386 523 Gene3D - 251 336 IPR046344 GO:0006367
Lele03g1386 523 Gene3D - 185 250 IPR046344 GO:0006367
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1386 Lele-ChrLele03 8365550 8369882 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1386 03 8365550 8369882 Lele26g1557 26 12138729 12165058 CCT
Lele03g1386 03 8365550 8369882 Lele28g1549 28 12764668 12786204 CCT
Lele03g1386 03 8365550 8369882 Lele03g1386 03 8365550 8369882 ECH
Lele01g1375 01 8454751 8460801 Lele03g1386 03 8365550 8369882 hybridization
Lele02g1656 02 20310490 20315900 Lele03g1386 03 8365550 8369882 hybridization