Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1370 ATGGATAAGCACACTATTGATGGCCGCATAGTTGAAGCAAAGAAAGCTGTTCCCAGGGATGATCAGCAGATGATAAACAGAACTTCTGGTAGTGTCCATGGCTCTCCTGGTCCTGGGCGCACAAAAAAGATTTTTGTTGGAGGTCTGCCTTCAAGCATCACTGAAAGTGAATTTAAGAAGTATTTTGATCAGTTTGGCACAATCAATGATGTTGTAGTAATGTACGATCACAACACCCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGATGCTGTGGACAGAGTTCTTTATAAAACATTCCATGAACTCAATGGAAAAATGGTTGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTACCCTGGATCCAGCCGAAGCCCGTTGTTAGGAACTAGTTTTGGTCTTAATAGGGCCAGTAGCTACCTAAACAGTTATGCGCAGGGTTATAACATGAATCCAGTTGGAGGCTATGGGGGGAGGATGGATGGTAGGTTCAGTCCTCTTACAAGTGGTAGAAGTGGAATTTCCCCCTTTGGCACCAGCGGTTATGGAATGGGACTGAATCTGGATGCAGGGCTGAGTGCAGGATATGGAGGGACATCCAATTATGGAAGCAATCTCGGCTATGGTCGGATGTTTAGTCCTTTTTACAGTGGCAACTCAAGCAGACACACAACTCCTATAGGCTATAATGCTGGTAACGGGAGAAGCGATTCTCTAATGAACTCACCTTCTCGAAATGTCTGGGGAAATGGTAGCCTAAGTAATGCCAATAACCAAGTCATTGCTGGTGCTAGCTTGGGATCTGGAAGTGGTGCTTTTGGCGTTACAATTAAAAATAATGGTGCAAATTGGGGTCAATCCTTTCCAACACAGGCTGGAGTGGCTGCTTCCGGGTATACCACTGGGATTAATGTTTATGAAGGTGGAGACAACAGTTTTGGGTTAGGTGGTACAGGTTATGGAAGAAATGGTAGTGTAGGTGTAAATTCATCTTCTACATTTTCTGCATCAGCTGGTGGTTATGAAGGATCCTATGGGGATTTATACCATAACGGTTCAGTTTACAATGACTCAACTTGGCGGTCTTCTGTTTCTGACCTAGATGGTTCTGGTTCATTTGGTTATGGACTTGGTGATATAGCCTCTGAGGATCCAGTAAAGAGTTCAGAGGGTTATATTGGAAGCTACAATGCTTCAAGCAGACAACCTAACAGAGGAATTGCTGCCTAG 1242 0.4428 MDKHTIDGRIVEAKKAVPRDDQQMINRTSGSVHGSPGPGRTKKIFVGGLPSSITESEFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLYKTFHELNGKMVEVKRAVPKELYPGSSRSPLLGTSFGLNRASSYLNSYAQGYNMNPVGGYGGRMDGRFSPLTSGRSGISPFGTSGYGMGLNLDAGLSAGYGGTSNYGSNLGYGRMFSPFYSGNSSRHTTPIGYNAGNGRSDSLMNSPSRNVWGNGSLSNANNQVIAGASLGSGSGAFGVTIKNNGANWGQSFPTQAGVAASGYTTGINVYEGGDNSFGLGGTGYGRNGSVGVNSSSTFSASAGGYEGSYGDLYHNGSVYNDSTWRSSVSDLDGSGSFGYGLGDIASEDPVKSSEGYIGSYNASSRQPNRGIAA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1370 413 Gene3D - 39 125 IPR012677 -
Lele03g1370 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 102 IPR000504 GO:0003723
Lele03g1370 413 SMART rrm1_1 43 115 IPR000504 GO:0003723
Lele03g1370 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 119 IPR000504 GO:0003723
Lele03g1370 413 SUPERFAMILY RNA-binding domain, RBD 41 207 IPR035979 GO:0003676
Lele03g1370 413 CDD RRM2_DAZAP1 40 119 IPR034131 GO:0003723
Lele03g1370 413 FunFam Heterogeneous nuclear ribonucleoprotein 1 39 126 - -
Lele03g1370 413 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1370 Lele-ChrLele03 8279154 8281608 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1370 20 143 Eukaryotic Initiation Factors Gene Family AT2G36660 32.283 5.68e-08 53.1