Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1367 ATGGAATCGGATCTTGGCAAGCTTTTCATTGGAGGAATTTCTTGGGACACTGATGAAGAACGACTTAAAGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGAGATCGCGTGACAGGCCGTGCTCGTGGTTTTGGTTTTGTAGTGTTTGCTGATCCTGCTGTTGCTGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCCCAGTTGAAGCAAAGAAAGCTGTTCCCAGGGATGATCAGCAGATGATAAACAGAACTTCTGGTAGTGTCCATGGCTCTCCTGGTCCTGGGCGCACAAAAAAGATTTTTGTTGGAGGTCTTCCTTCAAGCATCACTGAAAGCGAATTTAAGAAGTATTTTGATCAGTTTGGCACAATCAATGATGTTGTAGTAATGTACGATCACAACACCCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGATGCTGTGGACAGCGTTCTTTATAAAACATTCCATGAACTCAATGGAAAAATGGTTGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTCCCCCGGATCCAGCCGAAGCCCATTGTTAGGAACTAGTTTTGGTTTTAATCGGGCCAGTAGCTACCTAAACAGTTATGCGCAGGGTTATAACATGAATCCAGTTGGAGGCTATGGGGTGAGGATGGATGGTAGGTTCAGTCCTCTTACAAGTGGTAGAAGTGGAATTTCCCCCTTTGGCACCAGCGGTTATGGAATGGGACTGAATCTGGATGCAGGGCTGAGTGCAGGATATGGTGGGACTTCCAATTATGGAAGCAATCTCAGATATGGTCGGATGATTAGTCCTTTTTACAGTAGCGACTCAAGCAGATACACCACTCCTATAGGCTATAATGCTGGTAACGGGAGAAGCAATTCTCTTTTGAACTCGCCTTCTCGAAATGTCTGGGGAAATTGTGGCCTAAGTAATGCCAACAACCAAGTCAGTGCTGCTGCTAGCTTGGGATCTGGAATTGGTGCTTTTGGCGTTTCAATTAAAAGTAGTGGTGCAAATTGGGGCCAATCCTTTCCCACTCAGGGTGGAGGGGCTGCTTCCGGGTATACCACTGGGATTAATGTCTATGAAGGTGGAGACAACAGTTTTGGGTTAGGAGGTACAGGATATGGAAGAAATGGTAGTGTAGGTGTAAATTCATCGTCTACATTTTCTGCATCAGCTGGTGGTTATGAGGGATCCTATGGGGATTTGTACCATAGTAGTTCAGTTTACAGTGACTCAGCTTGGAGGTCTTCTTCTGATCCTGATAGTTCTGGTTCATTTGGTTATGGACTTGGTGGTATGGCCTCAGAGGACCCAGTAAACACTTCAGAGGGTTATATTGGAAGCTACAATGTTTCAAGCAGACAACCTAATAGAGGTAAGAACTTTGGCTACATCATGTGA 1443 0.4484 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADPAVAERVIMDKHIIDGRPVEAKKAVPRDDQQMINRTSGSVHGSPGPGRTKKIFVGGLPSSITESEFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEDAVDSVLYKTFHELNGKMVEVKRAVPKELSPGSSRSPLLGTSFGFNRASSYLNSYAQGYNMNPVGGYGVRMDGRFSPLTSGRSGISPFGTSGYGMGLNLDAGLSAGYGGTSNYGSNLRYGRMISPFYSSDSSRYTTPIGYNAGNGRSNSLLNSPSRNVWGNCGLSNANNQVSAAASLGSGIGAFGVSIKSSGANWGQSFPTQGGGAASGYTTGINVYEGGDNSFGLGGTGYGRNGSVGVNSSSTFSASAGGYEGSYGDLYHSSSVYSDSAWRSSSDPDSSGSFGYGLGGMASEDPVNTSEGYIGSYNVSSRQPNRGKNFGYIM 480
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1367 480 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 472 - -
Lele03g1367 480 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Lele03g1367 480 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
Lele03g1367 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lele03g1367 480 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Lele03g1367 480 Gene3D - 6 88 IPR012677 -
Lele03g1367 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Lele03g1367 480 SUPERFAMILY RNA-binding domain, RBD 105 271 IPR035979 GO:0003676
Lele03g1367 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Lele03g1367 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Lele03g1367 480 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lele03g1367 480 SMART rrm1_1 107 179 IPR000504 GO:0003723
Lele03g1367 480 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lele03g1367 480 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Lele03g1367 480 Gene3D - 103 191 IPR012677 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele03g1367 Lele-ChrLele03 8267906 8269607 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1367 2 207 Eukaryotic Initiation Factors Gene Family AT2G36660 28.899 2.41e-15 76.6