Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele03g1367 | ATGGAATCGGATCTTGGCAAGCTTTTCATTGGAGGAATTTCTTGGGACACTGATGAAGAACGACTTAAAGAATATTTTGGGAAATATGGGGAGGTGATAGAGGCTGTGATCATGAGAGATCGCGTGACAGGCCGTGCTCGTGGTTTTGGTTTTGTAGTGTTTGCTGATCCTGCTGTTGCTGAAAGAGTCATTATGGATAAGCACATAATTGATGGCCGCCCAGTTGAAGCAAAGAAAGCTGTTCCCAGGGATGATCAGCAGATGATAAACAGAACTTCTGGTAGTGTCCATGGCTCTCCTGGTCCTGGGCGCACAAAAAAGATTTTTGTTGGAGGTCTTCCTTCAAGCATCACTGAAAGCGAATTTAAGAAGTATTTTGATCAGTTTGGCACAATCAATGATGTTGTAGTAATGTACGATCACAACACCCAGAGGCCAAGAGGCTTTGGCTTCATCACTTATGATTCAGAAGATGCTGTGGACAGCGTTCTTTATAAAACATTCCATGAACTCAATGGAAAAATGGTTGAGGTCAAGAGGGCAGTTCCAAAAGAGCTTTCCCCCGGATCCAGCCGAAGCCCATTGTTAGGAACTAGTTTTGGTTTTAATCGGGCCAGTAGCTACCTAAACAGTTATGCGCAGGGTTATAACATGAATCCAGTTGGAGGCTATGGGGTGAGGATGGATGGTAGGTTCAGTCCTCTTACAAGTGGTAGAAGTGGAATTTCCCCCTTTGGCACCAGCGGTTATGGAATGGGACTGAATCTGGATGCAGGGCTGAGTGCAGGATATGGTGGGACTTCCAATTATGGAAGCAATCTCAGATATGGTCGGATGATTAGTCCTTTTTACAGTAGCGACTCAAGCAGATACACCACTCCTATAGGCTATAATGCTGGTAACGGGAGAAGCAATTCTCTTTTGAACTCGCCTTCTCGAAATGTCTGGGGAAATTGTGGCCTAAGTAATGCCAACAACCAAGTCAGTGCTGCTGCTAGCTTGGGATCTGGAATTGGTGCTTTTGGCGTTTCAATTAAAAGTAGTGGTGCAAATTGGGGCCAATCCTTTCCCACTCAGGGTGGAGGGGCTGCTTCCGGGTATACCACTGGGATTAATGTCTATGAAGGTGGAGACAACAGTTTTGGGTTAGGAGGTACAGGATATGGAAGAAATGGTAGTGTAGGTGTAAATTCATCGTCTACATTTTCTGCATCAGCTGGTGGTTATGAGGGATCCTATGGGGATTTGTACCATAGTAGTTCAGTTTACAGTGACTCAGCTTGGAGGTCTTCTTCTGATCCTGATAGTTCTGGTTCATTTGGTTATGGACTTGGTGGTATGGCCTCAGAGGACCCAGTAAACACTTCAGAGGGTTATATTGGAAGCTACAATGTTTCAAGCAGACAACCTAATAGAGGTAAGAACTTTGGCTACATCATGTGA | 1443 | 0.4484 | MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRVTGRARGFGFVVFADPAVAERVIMDKHIIDGRPVEAKKAVPRDDQQMINRTSGSVHGSPGPGRTKKIFVGGLPSSITESEFKKYFDQFGTINDVVVMYDHNTQRPRGFGFITYDSEDAVDSVLYKTFHELNGKMVEVKRAVPKELSPGSSRSPLLGTSFGFNRASSYLNSYAQGYNMNPVGGYGVRMDGRFSPLTSGRSGISPFGTSGYGMGLNLDAGLSAGYGGTSNYGSNLRYGRMISPFYSSDSSRYTTPIGYNAGNGRSNSLLNSPSRNVWGNCGLSNANNQVSAAASLGSGIGAFGVSIKSSGANWGQSFPTQGGGAASGYTTGINVYEGGDNSFGLGGTGYGRNGSVGVNSSSTFSASAGGYEGSYGDLYHSSSVYSDSAWRSSSDPDSSGSFGYGLGGMASEDPVNTSEGYIGSYNVSSRQPNRGKNFGYIM | 480 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele03g1367 | 480 | PANTHER | RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 | 1 | 472 | - | - | |
Lele03g1367 | 480 | CDD | RRM2_DAZAP1 | 104 | 183 | IPR034131 | GO:0003723 | |
Lele03g1367 | 480 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 104 | IPR035979 | GO:0003676 | |
Lele03g1367 | 480 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 82 | IPR000504 | GO:0003723 | |
Lele03g1367 | 480 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 103 | 190 | - | - | |
Lele03g1367 | 480 | Gene3D | - | 6 | 88 | IPR012677 | - | |
Lele03g1367 | 480 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 183 | IPR000504 | GO:0003723 | |
Lele03g1367 | 480 | SUPERFAMILY | RNA-binding domain, RBD | 105 | 271 | IPR035979 | GO:0003676 | |
Lele03g1367 | 480 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 8 | 75 | IPR000504 | GO:0003723 | |
Lele03g1367 | 480 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 165 | IPR000504 | GO:0003723 | |
Lele03g1367 | 480 | SMART | rrm1_1 | 7 | 78 | IPR000504 | GO:0003723 | |
Lele03g1367 | 480 | SMART | rrm1_1 | 107 | 179 | IPR000504 | GO:0003723 | |
Lele03g1367 | 480 | CDD | RRM1_hnRNPA_hnRNPD_like | 8 | 78 | - | - | |
Lele03g1367 | 480 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 5 | 87 | - | - | |
Lele03g1367 | 480 | Gene3D | - | 103 | 191 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele03g1367 | Lele-ChrLele03 | 8267906 | 8269607 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele03g1367 | 2 | 207 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 28.899 | 2.41e-15 | 76.6 |