Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1344 ATGGCGGACTCGGATAACGATTCTGGAGGGGCGCTGAACACGGGAGCCAATGCGAACAGTAGCGAATTGTCGCCAAGAGAGCAGGACAGGTTCCTACCGATAGCAAACGTGAGCAGGATCATGAAGAAGGCGCTTCCGGCGAATGCGAAGATCTCGAAGGACACGAAGGAGACAGTGCAAGAGTGCGTATCGGAGTTCATCAGCTTCATCACCGGAGAGGCCTCCGATAAGTGCCAGAGGGAGAAGCGGAAGACCATCAACGGGGACGACTTACTCTGGGCGATGACCACGCTGGGATTTGAGGACTACGTGGAGCCACTCAAGATTTACTTGCAGAGGTTCAGGGAAATGGAGGGAGAGAAGAGCGTGGTGGTAGCGCGTGAGAAAGGTGGTGGGGCGTCGAATAGTGCGTATGACGGCGGTGGCGGGGTGTACGGAGGTAGCGGAGGAGGTGGAATGGGAATGATGATGCATCAAGGACACCTGTACGGCTTTGGCGGGTTTCATCAAATGGGTGCAAGTGGTGGTCCTGTGATGGGTAAGAGCGGGCCAACTTATCCGGGTCCTGGATCTAATACGGGTAGACCCAGATAG 594 0.5572 MADSDNDSGGALNTGANANSSELSPREQDRFLPIANVSRIMKKALPANAKISKDTKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQRFREMEGEKSVVVAREKGGGASNSAYDGGGGVYGGSGGGGMGMMMHQGHLYGFGGFHQMGASGGPVMGKSGPTYPGPGSNTGRPR 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1344 197 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele03g1344 197 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Lele03g1344 197 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Lele03g1344 197 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Lele03g1344 197 Gene3D Histone, subunit A 19 138 IPR009072 GO:0046982
Lele03g1344 197 MobiDBLite consensus disorder prediction 1 28 - -
Lele03g1344 197 MobiDBLite consensus disorder prediction 174 197 - -
Lele03g1344 197 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 128 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele03g1344 197 SUPERFAMILY Histone-fold 28 132 IPR009072 GO:0046982
Lele03g1344 197 MobiDBLite consensus disorder prediction 7 26 - -
Lele03g1344 197 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Lele03g1344 197 FunFam Nuclear transcription factor Y subunit B-3 20 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1344 Lele-ChrLele03 8118530 8119123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1344 1 128 CCAAT-HAP3 Transcription Factor Family AT4G14540 82.812 4.42e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele03g1344 CBFD_NFYB_HMF 3.1e-26 CL0012