Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1343 ATGGATGAAGGTGAGGGAGGGTACGGTGAGAGTGGGGATCCGATGGATCAGTTCCATCGCAACGAAGCGATATCAGCTGTAGCTGATGAGGGTTTTTTGGCCGAGGAGGACGACGATTACGAGGACCTTTACAACGACGTTAATGTCGGGGAAGGGTTTCTTCAGTCTTTAAGAAAGAACGAGGATTCCGGGTTTCGGAATGAGGAGGTTGAGGAGAAAAAGACCCAATCAGCTACCGTGCCGCCGGAAACTGCTGGTGTTTCTATCCCAGGCGTCAGTGTCGGTGGTGGTGGTAGTACTGGTGGTGAGGCTGCCGCTGCGGGGGTTATGGATGCTGCGTCTAGGGTTCCAGGGCGAGCAGATGGGATTCAAAATCAAGGTTTGAGAGGGAATGAGATGGGTTTGAAAGGTAGTGGTGGATCAGGTACCCCTATGGGTGGTGGAGGAGGGATGAGGGTTGAATTAGGGCAACAACCGAGCAAGTTGAATGAGATGGAGGAGCAGAGTGCTAATAACAGTGCAGGAGTACAAGGCATGGGGCAGCAACCTCATGGTGGAGTTGTTGGGAATGTGGGAAATGAGAATTTGATGAGGCAGGGTGGTGGAGGAGGAAATCTCAATAGGCCTGGTGGCAATGGGGTTGGGAATAATGTGAGTGCTGTCAATGTCGTCAATACTGGAGGAGGAACTGCTATTCCAGGTGGTGGTGGTACTGGAAGTGGTGGTGGGGGCACCATTTTATTTGTTGGTGATTTACATTGGTGGACTACTGATGCTGAGTTGGAGGCAGAACTCTGTAGGTACGGGCCAGTGAAGGAGGTGAAATTTTTTGATGAGAAGGCTAGTGGAAAGTCAAAAGGGTATTGCCAGGTTGAGTTTTATGATCCCTCTGCTGCATCTTCCTGTAAAGAACAAATGAATGGGCATATGTTTAATGGGCGTCCATGCGTTGTTGCTTTTGCCTCTCCTTTTACCGTTAAGAGAATGGGAGAGGCTCAGGTGAGCAGAAATCAACAGATGGCCCAATCTTCTGCTTCTCAGACAAGGAGAGGACCTGCTGATTCAGGGGCTAAGACAGGTGGGAGTAACATTACTACTGGTGGAAACTACCAAGGTGGAGATGGAAACCGAGGCTATGGGAGAGGTAACTGGGGGAGAGGGAATAATCCTGGGATGGGAAATAGGGGCCCTGTTAATCCAATGAGGAATAGGGGTGGTGGGATGGGGGGTAGAGGCATCATGGGTAATGGTGGGAATGGATTTGGACAAGGAATTGGTGCCACCCCACCTCTGTTGCATCCTCAGTCAATGATGAATCAGGGTTTTGATCCTGCATTTGGTGGGCCTTTGGGTAGAATGGGTGGCTATGGGGGCTTTCCAGGTGCTCCAACTCCTCCATTCTCTGGCATTTTGCCTCAATTTCCTGCAGTTGGAGGTGTTGGTTTGCCTGGAGTAGCACCTCATGTTAATCCAGCCTTTTTTGGAAGAGGGATGCCCATGAATGGTATGGGGATGATGCCCACTTCAACAGTTGATGGGCCTAATATGGGAATGTGGTCAGATCCAAGTATGGGTGGATGGGGCGGTGAAGAGCATGGTGGTGGGAGGGCTGGAGAGTCGAGTTATGGTGAGGAAGCTGCATCGGAACATCAGTATGGTGAAGTGAGTCATGATAGAGGAGGTTGGCCAAATGCCATGAGGGAAAAAGATAGAGGATCAGAAAGGGACTGGTCTGGCTCTTCTGAACGAAGGTACAAGGATGAAAGAGATCAAGGATATGAGAGAGATGCACCTAGAGAAAAAGACATGGGGCAGGACCATGAATGGTCTGAAAGAAGACATCGTGATGATAGAGAAGTAGGTCGTGAACGTGATAGGGAGCGCGACCGTGATCGTGAACGTTCTCGAGACCGTGACCGTGAAAGGGATCGTGAAAGAGACCGTGAACGTGATAGGTACAAGGAAGAAAGGGACAGATATGCTGACCATCATAGGTACAGAGATCGTGAAGCAGACCATGAGGATGAGTGGGAACGGGGACGGTCATCAAGGACACACAGCAAATCAAGATTATCACAAGAGGATGATCATCATTCTAGATCTAGGGATGCTGATTATGGAAAGAGGAGACGTCTTACCTCTGAGTAA 2148 0.4986 MDEGEGGYGESGDPMDQFHRNEAISAVADEGFLAEEDDDYEDLYNDVNVGEGFLQSLRKNEDSGFRNEEVEEKKTQSATVPPETAGVSIPGVSVGGGGSTGGEAAAAGVMDAASRVPGRADGIQNQGLRGNEMGLKGSGGSGTPMGGGGGMRVELGQQPSKLNEMEEQSANNSAGVQGMGQQPHGGVVGNVGNENLMRQGGGGGNLNRPGGNGVGNNVSAVNVVNTGGGTAIPGGGGTGSGGGGTILFVGDLHWWTTDAELEAELCRYGPVKEVKFFDEKASGKSKGYCQVEFYDPSAASSCKEQMNGHMFNGRPCVVAFASPFTVKRMGEAQVSRNQQMAQSSASQTRRGPADSGAKTGGSNITTGGNYQGGDGNRGYGRGNWGRGNNPGMGNRGPVNPMRNRGGGMGGRGIMGNGGNGFGQGIGATPPLLHPQSMMNQGFDPAFGGPLGRMGGYGGFPGAPTPPFSGILPQFPAVGGVGLPGVAPHVNPAFFGRGMPMNGMGMMPTSTVDGPNMGMWSDPSMGGWGGEEHGGGRAGESSYGEEAASEHQYGEVSHDRGGWPNAMREKDRGSERDWSGSSERRYKDERDQGYERDAPREKDMGQDHEWSERRHRDDREVGRERDRERDRDRERSRDRDRERDRERDRERDRYKEERDRYADHHRYRDREADHEDEWERGRSSRTHSKSRLSQEDDHHSRSRDADYGKRRRLTSE 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1343 715 Gene3D - 239 364 IPR012677 -
Lele03g1343 715 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 245 323 IPR000504 GO:0003723
Lele03g1343 715 MobiDBLite consensus disorder prediction 513 715 - -
Lele03g1343 715 MobiDBLite consensus disorder prediction 1 23 - -
Lele03g1343 715 CDD RRM_CFIm68_CFIm59 247 320 - -
Lele03g1343 715 MobiDBLite consensus disorder prediction 331 372 - -
Lele03g1343 715 SUPERFAMILY RNA-binding domain, RBD 243 338 IPR035979 GO:0003676
Lele03g1343 715 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 247 316 IPR000504 GO:0003723
Lele03g1343 715 MobiDBLite consensus disorder prediction 119 214 - -
Lele03g1343 715 SMART rrm1_1 246 319 IPR000504 GO:0003723
Lele03g1343 715 MobiDBLite consensus disorder prediction 331 398 - -
Lele03g1343 715 MobiDBLite consensus disorder prediction 550 715 - -
Lele03g1343 715 MobiDBLite consensus disorder prediction 61 76 - -
Lele03g1343 715 PANTHER CLEAVAGE AND POLYADENYLATION SPECIFIC FACTOR 20 653 IPR034772 -
Lele03g1343 715 MobiDBLite consensus disorder prediction 161 179 - -
Lele03g1343 715 MobiDBLite consensus disorder prediction 58 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1343 Lele-ChrLele03 8111751 8113898 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1343 225 321 Eukaryotic Initiation Factors Gene Family AT4G34110 30.303 3.59e-07 51.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1343 03 8111751 8113898 Lele03g1343 03 8111751 8113898 ECH
Lele01g1334 01 8169530 8171659 Lele03g1343 03 8111751 8113898 hybridization
Lele02g1605 02 19988851 19991016 Lele03g1343 03 8111751 8113898 hybridization