Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1288 ATGTTTATGCTGAGCCTTGGTGGCGTGGCGTTGGGAAATTACCTTCAAGAACACCAAGGGATACAGCATGCTTCATCATCTGCACCATCCATGCGAGATGAATGCTTTACACAGGCTCCACAGCTCGAACTTGTTGGTCATTCAATTGCATGTGCTTCACATCCTTATCAGGATCCATATTTTGCAGGAATGATGGCGGCTTATGGTCCCCACCAGATGGGATATCCTCCTTTTATGGGAATGCCACAGGCCAGAATGCCTTTGCCCCTTGAGATGGCACAAGAACCTGTTTATGTAAATGCGAAACAATACCCAGCAATTCTTAGGCGTAGACAGGCTCGCGCGAAGGCAGAGCTTGAAAAGAAGCTAATAAAAGTTAGAAAGCCATACCTTCATGAGTCTCGGCATCAGCATGCAATCAGGAGGGCAAGGGGTACTGGAGGTCGCTTTGCAAAGAAAAATGATGGTACTGTGGCCTCAAACCACTCTGGTAAAGAAAAAGATGTGGGCTCTGGTCCCGTGGTATCTTCACAATCAATTAGTTCATCATGTGAGTCTGCTGAAACCTGGAACTCTCCTAATGTGCAACAAGATTCCAGAGGATATAAACTTCCTGACCGATATGAAGCACACAACTATGCGAACAAAAATGGCCCTTATCATAATCATAGTGGCCTGCAATCTTCCGCTTATCATTTGCACTCAGGTGAAAGAGTGGACGAAGGGGACTGTTCAGGACAACAACGGGGGAGTATCTCTTCCGAACACACCCCACAGAGGCGTCTTGCGATTCAGTAG 798 0.4687 MFMLSLGGVALGNYLQEHQGIQHASSSAPSMRDECFTQAPQLELVGHSIACASHPYQDPYFAGMMAAYGPHQMGYPPFMGMPQARMPLPLEMAQEPVYVNAKQYPAILRRRQARAKAELEKKLIKVRKPYLHESRHQHAIRRARGTGGRFAKKNDGTVASNHSGKEKDVGSGPVVSSQSISSSCESAETWNSPNVQQDSRGYKLPDRYEAHNYANKNGPYHNHSGLQSSAYHLHSGERVDEGDCSGQQRGSISSEHTPQRRLAIQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1288 265 MobiDBLite consensus disorder prediction 172 199 - -
Lele03g1288 265 MobiDBLite consensus disorder prediction 130 147 - -
Lele03g1288 265 MobiDBLite consensus disorder prediction 130 265 - -
Lele03g1288 265 SMART cbf3 92 153 IPR001289 GO:0003700|GO:0006355
Lele03g1288 265 MobiDBLite consensus disorder prediction 217 231 - -
Lele03g1288 265 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 19 200 IPR001289 GO:0003700|GO:0006355
Lele03g1288 265 ProSitePatterns NF-YA/HAP2 subunit signature. 98 118 IPR018362 GO:0003677|GO:0016602
Lele03g1288 265 Gene3D - 93 155 - -
Lele03g1288 265 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 95 150 IPR001289 GO:0003700|GO:0006355
Lele03g1288 265 PRINTS CCAAT-binding transcription factor subunit B signature 96 118 IPR001289 GO:0003700|GO:0006355
Lele03g1288 265 PRINTS CCAAT-binding transcription factor subunit B signature 127 150 IPR001289 GO:0003700|GO:0006355
Lele03g1288 265 ProSiteProfiles NF-YA/HAP2 family profile. 93 153 IPR001289 GO:0003700|GO:0006355
Lele03g1288 265 MobiDBLite consensus disorder prediction 246 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1288 Lele-ChrLele03 7732177 7734688 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1288 40 265 CCAAT-HAP2 Transcription Factor Family AT3G20910 55.066 3.02e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lele03g1288 CBFB_NFYA 6.6e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1432 25 10530172 10538425 Lele03g1288 03 7732177 7734688 CCT
Lele26g1461 26 10370562 10379590 Lele03g1288 03 7732177 7734688 CCT
Lele27g0650 27 14436877 14445064 Lele03g1288 03 7732177 7734688 CCT
Lele28g1446 28 10617288 10619549 Lele03g1288 03 7732177 7734688 CCT
Lele03g1288 03 7732177 7734688 Lele03g1288 03 7732177 7734688 ECH
Lele03g1288 03 7732177 7734688 Lele04g1532 04 20337990 20339898 ECH
Lele01g1275 01 7758477 7761096 Lele03g1288 03 7732177 7734688 hybridization
Lele02g1544 02 19487811 19489898 Lele03g1288 03 7732177 7734688 hybridization