Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1272 ATGAAGCTCAGCGTCCGCTCCTCCAGAAACTTCTTCAGTAAACATTCATATATAAAGCGTTCTTTCCTCTTGTCTTTCAATATTGATATTGCCCAGGGAAGATCGAGGGCGGGAGAGATCCGGTACCAGCTAACAAAGTCTTTTAGAGAAAGAAATCTTGTAACATCTGCTGATATGATGTCTTATTCCAGAAGATCAAGGTATTCTCAATCACCTTCTCCGTACAATCGATATGGGAGGTCTGTCTCCAGGTCTCTGTCTAGTTCAAGATCTAGAAGCTTTTCAAGGAGCCCATCAAGAGATGCAGAGAATCCTGGTAACAACTTGTATGTTACAGGCTTGTCTCCTCGGATTACCAAGAGAGAACTAGAGAAGCATTTTGCAAGTGAGGGAAAAGTGATTGATGTTCATTTAGTTGTTGATCCTTGGACAAGAGAATCACGAGGGTTTGGATTTGTGACTTTGGAAACTGTTGAGGAGGCTGACCGATGCATAAAGTATCTGAATCGCTCTGTGCTAGAAGGGCGTGTCATCATGGTAGAGAAGTTTCTGTGGCAGCAGTATCAGACCATTGGGGTTGCTAGAAGACGTCGAGGTCGAACTCCAACCCCTGGGAGGTATCTTGGGTTGAGGACTGTTCGGGCTCGTCGTCGCTCTGTGAGCTCCTCCCCTCGCCGTTCTCCTAGTTATTCTCCTTACAGAAGAAGTTACAGTCGGTCGCCGTATTCTTCAGATCGCAGCAGGGGTCGTTCTTACTCTCCTTACCACAGCCGGCGGAGGTCCTATTCTCCCTATTACAGCAGAAGGAGGTCCTACTCTCCTTATGGCCGGCACAGATACTATGACCGACACAGATCCTATTCTCCTTACAGCAGGTCACCTGTTAGCAGGCGAGATAGATCATACTCTCCTTATGACTCGTGGTATGACTCACCTGATGATCGCTACTCCAGAAGGCACCGTTATAGGTCCATTTCTCGAAGTATCTCACCAAGGCCAAGGAGAAGCTCAAGGAGGTATTCTCGCAGCGTCTCGCCGGTGAAGAGGAGGAGCTCAAGAAGGGGCTATCCTGGGAGTCGGTCCCCTAGACCAAGGAGGAGTTCATGGAGGAGGAGCTATTCGCGAAGCCTTTCCCCTAGACCAAGGAGGAGTTCAAGGAGCTATTCTCGCAGCATCCCTCCAAGACCAAGAGGCAGTAGTAGGAGAGGTGGTTCTTCTAAACGTGGGCATACACCAGTTAGTGATAGAAGCTACTCCAGAAGTGCAAGTTCAAGATCAGTATCAAGGTCCCTTACTTCTAGATCAGCGTCTCCTTGA 1317 0.4829 MKLSVRSSRNFFSKHSYIKRSFLLSFNIDIAQGRSRAGEIRYQLTKSFRERNLVTSADMMSYSRRSRYSQSPSPYNRYGRSVSRSLSSSRSRSFSRSPSRDAENPGNNLYVTGLSPRITKRELEKHFASEGKVIDVHLVVDPWTRESRGFGFVTLETVEEADRCIKYLNRSVLEGRVIMVEKFLWQQYQTIGVARRRRGRTPTPGRYLGLRTVRARRRSVSSSPRRSPSYSPYRRSYSRSPYSSDRSRGRSYSPYHSRRRSYSPYYSRRRSYSPYGRHRYYDRHRSYSPYSRSPVSRRDRSYSPYDSWYDSPDDRYSRRHRYRSISRSISPRPRRSSRRYSRSVSPVKRRSSRRGYPGSRSPRPRRSSWRRSYSRSLSPRPRRSSRSYSRSIPPRPRGSSRRGGSSKRGHTPVSDRSYSRSASSRSVSRSLTSRSASP 438
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1272 438 MobiDBLite consensus disorder prediction 371 394 - -
Lele03g1272 438 MobiDBLite consensus disorder prediction 321 370 - -
Lele03g1272 438 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 178 IPR000504 GO:0003723
Lele03g1272 438 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 181 IPR000504 GO:0003723
Lele03g1272 438 Gene3D - 49 185 IPR012677 -
Lele03g1272 438 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 103 330 - -
Lele03g1272 438 MobiDBLite consensus disorder prediction 64 110 - -
Lele03g1272 438 MobiDBLite consensus disorder prediction 195 438 - -
Lele03g1272 438 MobiDBLite consensus disorder prediction 405 438 - -
Lele03g1272 438 MobiDBLite consensus disorder prediction 222 260 - -
Lele03g1272 438 SUPERFAMILY RNA-binding domain, RBD 97 205 IPR035979 GO:0003676
Lele03g1272 438 SMART rrm1_1 108 181 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele03g1272 Lele-ChrLele03 7617851 7620924 Dispersed/Proximal
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1272 108 233 Eukaryotic Initiation Factors Gene Family AT2G36660 29.365 1.89e-07 51.6
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1272 03 7617851 7620924 Lele03g1272 03 7617851 7620924 ECH
Lele01g1259 01 7637206 7640365 Lele03g1272 03 7617851 7620924 hybridization
Lele02g1528 02 19372237 19376805 Lele03g1272 03 7617851 7620924 hybridization