Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele03g1272 | ATGAAGCTCAGCGTCCGCTCCTCCAGAAACTTCTTCAGTAAACATTCATATATAAAGCGTTCTTTCCTCTTGTCTTTCAATATTGATATTGCCCAGGGAAGATCGAGGGCGGGAGAGATCCGGTACCAGCTAACAAAGTCTTTTAGAGAAAGAAATCTTGTAACATCTGCTGATATGATGTCTTATTCCAGAAGATCAAGGTATTCTCAATCACCTTCTCCGTACAATCGATATGGGAGGTCTGTCTCCAGGTCTCTGTCTAGTTCAAGATCTAGAAGCTTTTCAAGGAGCCCATCAAGAGATGCAGAGAATCCTGGTAACAACTTGTATGTTACAGGCTTGTCTCCTCGGATTACCAAGAGAGAACTAGAGAAGCATTTTGCAAGTGAGGGAAAAGTGATTGATGTTCATTTAGTTGTTGATCCTTGGACAAGAGAATCACGAGGGTTTGGATTTGTGACTTTGGAAACTGTTGAGGAGGCTGACCGATGCATAAAGTATCTGAATCGCTCTGTGCTAGAAGGGCGTGTCATCATGGTAGAGAAGTTTCTGTGGCAGCAGTATCAGACCATTGGGGTTGCTAGAAGACGTCGAGGTCGAACTCCAACCCCTGGGAGGTATCTTGGGTTGAGGACTGTTCGGGCTCGTCGTCGCTCTGTGAGCTCCTCCCCTCGCCGTTCTCCTAGTTATTCTCCTTACAGAAGAAGTTACAGTCGGTCGCCGTATTCTTCAGATCGCAGCAGGGGTCGTTCTTACTCTCCTTACCACAGCCGGCGGAGGTCCTATTCTCCCTATTACAGCAGAAGGAGGTCCTACTCTCCTTATGGCCGGCACAGATACTATGACCGACACAGATCCTATTCTCCTTACAGCAGGTCACCTGTTAGCAGGCGAGATAGATCATACTCTCCTTATGACTCGTGGTATGACTCACCTGATGATCGCTACTCCAGAAGGCACCGTTATAGGTCCATTTCTCGAAGTATCTCACCAAGGCCAAGGAGAAGCTCAAGGAGGTATTCTCGCAGCGTCTCGCCGGTGAAGAGGAGGAGCTCAAGAAGGGGCTATCCTGGGAGTCGGTCCCCTAGACCAAGGAGGAGTTCATGGAGGAGGAGCTATTCGCGAAGCCTTTCCCCTAGACCAAGGAGGAGTTCAAGGAGCTATTCTCGCAGCATCCCTCCAAGACCAAGAGGCAGTAGTAGGAGAGGTGGTTCTTCTAAACGTGGGCATACACCAGTTAGTGATAGAAGCTACTCCAGAAGTGCAAGTTCAAGATCAGTATCAAGGTCCCTTACTTCTAGATCAGCGTCTCCTTGA | 1317 | 0.4829 | MKLSVRSSRNFFSKHSYIKRSFLLSFNIDIAQGRSRAGEIRYQLTKSFRERNLVTSADMMSYSRRSRYSQSPSPYNRYGRSVSRSLSSSRSRSFSRSPSRDAENPGNNLYVTGLSPRITKRELEKHFASEGKVIDVHLVVDPWTRESRGFGFVTLETVEEADRCIKYLNRSVLEGRVIMVEKFLWQQYQTIGVARRRRGRTPTPGRYLGLRTVRARRRSVSSSPRRSPSYSPYRRSYSRSPYSSDRSRGRSYSPYHSRRRSYSPYYSRRRSYSPYGRHRYYDRHRSYSPYSRSPVSRRDRSYSPYDSWYDSPDDRYSRRHRYRSISRSISPRPRRSSRRYSRSVSPVKRRSSRRGYPGSRSPRPRRSSWRRSYSRSLSPRPRRSSRSYSRSIPPRPRGSSRRGGSSKRGHTPVSDRSYSRSASSRSVSRSLTSRSASP | 438 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele03g1272 | 438 | MobiDBLite | consensus disorder prediction | 371 | 394 | - | - | |
Lele03g1272 | 438 | MobiDBLite | consensus disorder prediction | 321 | 370 | - | - | |
Lele03g1272 | 438 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 109 | 178 | IPR000504 | GO:0003723 | |
Lele03g1272 | 438 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 107 | 181 | IPR000504 | GO:0003723 | |
Lele03g1272 | 438 | Gene3D | - | 49 | 185 | IPR012677 | - | |
Lele03g1272 | 438 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 103 | 330 | - | - | |
Lele03g1272 | 438 | MobiDBLite | consensus disorder prediction | 64 | 110 | - | - | |
Lele03g1272 | 438 | MobiDBLite | consensus disorder prediction | 195 | 438 | - | - | |
Lele03g1272 | 438 | MobiDBLite | consensus disorder prediction | 405 | 438 | - | - | |
Lele03g1272 | 438 | MobiDBLite | consensus disorder prediction | 222 | 260 | - | - | |
Lele03g1272 | 438 | SUPERFAMILY | RNA-binding domain, RBD | 97 | 205 | IPR035979 | GO:0003676 | |
Lele03g1272 | 438 | SMART | rrm1_1 | 108 | 181 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele03g1272 | Lele-ChrLele03 | 7617851 | 7620924 | Dispersed/Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele03g1272 | 108 | 233 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 29.365 | 1.89e-07 | 51.6 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele03g1272 | 03 | 7617851 | 7620924 | Lele03g1272 | 03 | 7617851 | 7620924 | ECH | |
Lele01g1259 | 01 | 7637206 | 7640365 | Lele03g1272 | 03 | 7617851 | 7620924 | hybridization | |
Lele02g1528 | 02 | 19372237 | 19376805 | Lele03g1272 | 03 | 7617851 | 7620924 | hybridization |