Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1263 ATGAAGTGGGAAACGGGAATGTTCTCACCTGGACAATACATCACCAATCACAACACCAGCTGGATTGTTGAAGATAATCGGAATTCCAAATGGACTTGTGCTGAGAACAAACTCTTTGAGAATGCTCTCGCGGTTTACGATAAGGATACACCAGATCGGTGGCAGAAAGTGGCCGCAGAGATCCCAGGGAAGACGGTCGTTGACGTGATGAAGCAGTACAAACAGCTTGAAGATGATGTTTGTGACATAGAAGCTGGTCTGGTCTCAGTTCCTGAATATTACGCCATCACTACTCCTTCCTCCTCATCTTTCACCTTGGACTCTTGGGCAAGCTTTTCTTCTGGTTATGAGCCCTCGCTCGGATTCCATGGAAAGAGACCCTCCTCTGGAAGATCCTCTGAGAATGAAAGGAAGAAAGGAATCCCTTGGACCGAAGAAGAACACAAACTGTTTCTTCTGGGGCTGAAGAAGCATGGGAAAGGAGATTGGAGGAACATATCAAGGAACTTTGTGATGACTCGAACACCGACTCAAGTAGCTAGTCATGCTCAGAAATACTTCATAAGGCAACTCTCAGGAGGCAAAGACAAAAGAAGAGCAAGCATCCATGACATAACCACTGTGAACCTCGCAGAAACTTCAATAAAAGCTTCTTCTCATTCACGAGACACCACCAAGAAGTCCTCTTCTTCTTCTTCTTCACCGCCACGACAGAACCACATGAACATGATGATGCTCCCACAGTCATCATCACAACAGCAGCACAATTCTGCAGCAGTTCCCAGCAGAACACAGTTTCAGTGGACCCAACAGCCAATGGCTACTTCTCTGAGTGATCCTGCACTTGATGAACTGTTCATGTCTGATTATTCTTATGGGATTGGTGATGACTTGTCATCATCCTTTGGGTTTACAATGCAGGGCCAGAATCTGCACACAAGTTCTCTTTTTCATCATGAATCTTCTTCCTACTTAGGACCTCACAGTCAAAGCATGGTTTTCCAGATGCCATGA 1014 0.4556 MKWETGMFSPGQYITNHNTSWIVEDNRNSKWTCAENKLFENALAVYDKDTPDRWQKVAAEIPGKTVVDVMKQYKQLEDDVCDIEAGLVSVPEYYAITTPSSSSFTLDSWASFSSGYEPSLGFHGKRPSSGRSSENERKKGIPWTEEEHKLFLLGLKKHGKGDWRNISRNFVMTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLAETSIKASSHSRDTTKKSSSSSSSPPRQNHMNMMMLPQSSSQQQHNSAAVPSRTQFQWTQQPMATSLSDPALDELFMSDYSYGIGDDLSSSFGFTMQGQNLHTSSLFHHESSSYLGPHSQSMVFQMP 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1263 337 MobiDBLite consensus disorder prediction 121 140 - -
Lele03g1263 337 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 138 190 IPR006447 GO:0003677
Lele03g1263 337 Pfam Myb-like DNA-binding domain 142 187 IPR001005 -
Lele03g1263 337 SUPERFAMILY Homeodomain-like 29 84 IPR009057 -
Lele03g1263 337 ProSiteProfiles Myb-like domain profile. 135 187 IPR001005 -
Lele03g1263 337 FunFam Transcription factor SRM1 23 90 - -
Lele03g1263 337 MobiDBLite consensus disorder prediction 213 242 - -
Lele03g1263 337 SMART sant 139 189 IPR001005 -
Lele03g1263 337 SMART sant 27 79 IPR001005 -
Lele03g1263 337 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 25 267 IPR043363 -
Lele03g1263 337 Gene3D - 23 90 - -
Lele03g1263 337 ProSiteProfiles SANT domain profile. 143 191 IPR017884 -
Lele03g1263 337 CDD SANT 142 187 IPR001005 -
Lele03g1263 337 Gene3D - 141 191 - -
Lele03g1263 337 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 191 IPR017930 -
Lele03g1263 337 SUPERFAMILY Homeodomain-like 137 190 IPR009057 -
Lele03g1263 337 CDD SANT 30 76 IPR001005 -
Lele03g1263 337 FunFam transcription factor MYB1R1 141 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1263 Lele-ChrLele03 7540349 7541596 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele03g1263 Myb_DNA-binding 1.8e-12 CL0123