Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1245 ATGGGGAAATCAGCGTTTCATGATTCTCTCAAAGCTTTGGAAGCTGATATTCAGTACGCCAATGCTCTGTTATTAGGGTATCCCAGGGATAAAGATGGAGCATACTTTCAAATGAGACTGTCATACGGTCCAGGTTCTACCTTATTTCTTTTTCTTGTTCAATGGGCGGATTACCACCTGGCTGGTGCTCTAGGTTTGCTGAGAGTTCTGATTTATATGACATATGGAGATGGGAAGACCACCATGTCAATATATGAAAGGAAAGCAAGCATTAAAGAGTTTAACTCGGTGATATTTCCTGCTTTATTGCAACTTGAGAAAGGCATCACAGATTTGGAGGAAAAGAAACAAAATGAAGTCTATGCTATCAGATACAAGAACAAAGGAAAGCAATCAAAATTTGACATGGAAAGAGAAGAGGAATGTGGAATTTGCTTGGAGGTGAAGGCAAAAGTTGTGCTGCCTAATTGCTGCCATTGCATGTGTTTGAAGTGCTTCAGGGATTGGTGTGAGAGATCCGAGTCGTGCCCCTTTTGCCGGGGAAATCTTAAAAGGGTCAACTCAGGCGACCTTTGGAATTACATAGATGATGGTGATGTTGTGGATCTCAGAACGATTTTCAAAGAAAACCTCAAGAGGCTGCATTTGTACATAGAGAAGTTGCCTATCGTCGATCCAGACCCCATGCATGTCTCTTATGAACCTTGTAGGAGTTAA 717 0.417 MGKSAFHDSLKALEADIQYANALLLGYPRDKDGAYFQMRLSYGPGSTLFLFLVQWADYHLAGALGLLRVLIYMTYGDGKTTMSIYERKASIKEFNSVIFPALLQLEKGITDLEEKKQNEVYAIRYKNKGKQSKFDMEREEECGICLEVKAKVVLPNCCHCMCLKCFRDWCERSESCPFCRGNLKRVNSGDLWNYIDDGDVVDLRTIFKENLKRLHLYIEKLPIVDPDPMHVSYEPCRS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1245 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 190 IPR013083 -
Lele03g1245 238 ProSiteProfiles Zinc finger RING-type profile. 142 180 IPR001841 -
Lele03g1245 238 Pfam Ring finger domain 141 180 IPR001841 -
Lele03g1245 238 FunFam RING/U-box superfamily protein 123 189 - -
Lele03g1245 238 PANTHER RING FINGER PROTEIN 41, 151 4 227 - -
Lele03g1245 238 SUPERFAMILY RING/U-box 130 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1245 Lele-ChrLele03 7430852 7432997 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1245 141 220 C3H Transcription Factor Family AT2G20030 31.818 6.44e-06 44.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1245 03 7430852 7432997 Lele03g1245 03 7430852 7432997 ECH
Lele01g1233 01 7463545 7465504 Lele03g1245 03 7430852 7432997 hybridization
Lele02g1503 02 19192850 19194987 Lele03g1245 03 7430852 7432997 hybridization