Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1242 ATGAGTATACGACGGTGCGGTTGGAAATTTCGTTTGACGTTTTCATTGTCTTGCAGAAGCAGCAAACTTGGAGAATGGAACGCAGCTGAGAGGGGAAAACGACGATCGATCATCCACTACCGTTTATTTCTCAACCTACAGACAGAGATAGAGATGGAAGATGACATTGAGAAGAAAGGAGAGGGAAGTGGGAAGAAGAATATGATGATGGAGAGGAGGAAGTCGGATCTAATAGTGACAATACAGAGAGACAATAGCAATGGCGGAATGAGAGGTCAAGTGTTGAGGAGAATTATGGGAAACTTGCAAGAGGTCATCTTCGGAACCAAGCTTGCCGTGCTTTTTCCCGCCGTCCCTCTCGCCGTTGCCGCCGATACCTATGACTTTGGACGAGCGTGGATATTTGCTTTGAGCTTACTTGGACTGGCCCCTCTAGCTGAACGTGTCAGCTTTCTCACAGAACAGATCGCATATTACACTGGCCCAACAGTTGGAGGGCTTCTGAATGCAACATGTGGGAATGCAACAGAGATGATAATAGCACTATTGGCACTTCACAAGAACAAAATCAATGTTGTCAAGTTCTCTCTTTTGGGTTCCATTCTCTCTAACCTCCTCTTAGTTCTTGGCTCTTCACTCCTCTGTGGAGGCCTTGCCAACCTCAAGAAAGAACAGAGATATGACAGAAAACAGGCAGATGTAAACTCACTGCTTTTGCTTTTGGGGTTGCTTTGCCATTTGCTTCCATTGATGTTCAAGTATGCCCTAGCAGGGGACCATTACCCTGTAGCCACTTCCACTCTTCAATTGTCAAGAGCAAGTAGTATTGTTATGCTTCTTGCTTATGTTGCATATATCTTCTTCCAACTGAAAACTCACAGGCAGTTATTTGATTCACAAGAGGAAGATGGAGAAGAAGAGAAGGCTGTAATAGGATTTTGGGTGGCATTTACTTGGTTGGTGGGCATGACACTTCTCATATCTTTGCTTTCTGAATATGTTGTGGGAACTATTGAGGCTGCTTCAGATTCTTGGGGTATTTCTGTAAGCTTCATTAGCATAATTTTGCTCCCTATTGTGGGGAATGCTGCAGAACATGCTGGTTCAATCATATTTGCTTTTAAGAACAAGCTGGATATATCACTAGGTGTTGCTATGGGATCTGCAACTCAAATTTCTATGTTTGTGGTTCCATTAAGTGTGATTGTTGCATGGATAATGGGTGTAAAAATGGACCTAGATTTTAATCTGCTAGAAACAGGGTGTCTTGCGTTGACAATATTAGTCACTGCTTTCACTTTGCAGGATGGAACTTCACACTATATGAAAGGAGTGGTGCTTTCCCTGTGTTACATTGTCATTGCTGCTTGCTTCTTTGTTCATAAAGCTCCATTTTCTGATCAAATTCCAGGGCAGAATGTTAGATTTCAACCATCTATGGATGCCATGGCCACTTGA 1458 0.4307 MSIRRCGWKFRLTFSLSCRSSKLGEWNAAERGKRRSIIHYRLFLNLQTEIEMEDDIEKKGEGSGKKNMMMERRKSDLIVTIQRDNSNGGMRGQVLRRIMGNLQEVIFGTKLAVLFPAVPLAVAADTYDFGRAWIFALSLLGLAPLAERVSFLTEQIAYYTGPTVGGLLNATCGNATEMIIALLALHKNKINVVKFSLLGSILSNLLLVLGSSLLCGGLANLKKEQRYDRKQADVNSLLLLLGLLCHLLPLMFKYALAGDHYPVATSTLQLSRASSIVMLLAYVAYIFFQLKTHRQLFDSQEEDGEEEKAVIGFWVAFTWLVGMTLLISLLSEYVVGTIEAASDSWGISVSFISIILLPIVGNAAEHAGSIIFAFKNKLDISLGVAMGSATQISMFVVPLSVIVAWIMGVKMDLDFNLLETGCLALTILVTAFTLQDGTSHYMKGVVLSLCYIVIAACFFVHKAPFSDQIPGQNVRFQPSMDAMAT 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1242 485 Pfam Sodium/calcium exchanger protein 316 457 IPR004837 GO:0016020|GO:0055085
Lele03g1242 485 Pfam Sodium/calcium exchanger protein 132 290 IPR004837 GO:0016020|GO:0055085
Lele03g1242 485 FunFam Vacuolar cation/proton exchanger 162 305 - -
Lele03g1242 485 FunFam Vacuolar cation/proton exchanger 306 460 - -
Lele03g1242 485 TIGRFAM cax: calcium/proton exchanger 116 459 IPR004798 GO:0006816|GO:0015369
Lele03g1242 485 Gene3D - 162 460 IPR044880 -
Lele03g1242 485 TIGRFAM caca2: calcium/proton exchanger 98 459 - -
Lele03g1242 485 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 85 464 IPR004713 GO:0006812|GO:0008324|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1242 Lele-ChrLele03 7400510 7404376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1242 72 467 Antiporters AT2G38170 67.822 0.0 520
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1692 25 24604647 24611650 Lele03g1242 03 7400510 7404376 CCT
Lele26g1694 26 20471041 20475198 Lele03g1242 03 7400510 7404376 CCT
Lele27g0396 27 3572925 3582878 Lele03g1242 03 7400510 7404376 CCT
Lele28g1698 28 19911706 19917379 Lele03g1242 03 7400510 7404376 CCT
Lele03g1242 03 7400510 7404376 Lele03g1242 03 7400510 7404376 ECH
Lele01g1230 01 7438365 7441075 Lele03g1242 03 7400510 7404376 hybridization
Lele02g1500 02 19159533 19162202 Lele03g1242 03 7400510 7404376 hybridization