Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1237 ATGGCCACTCTCACTCGCGGAGATAGTCGGCGAACCAGAGTGTGTGGAAGAAGCGTAGGGATGGCGAAAACGGCGTTGTTGTTGCTCTGGACCCTGTTCCTCTTCGGCACTCTCGCCCTCATCCAGGCGAAGAAGTCGAAGGAGGATTTGAAAGAAGTGACACACAAGGTTTATTTCGACATCGAGATTGATGGAAAGCCTGCTGGTCGTGTTGTAATGGGTCTTTTTGGGAAGGCAGTTCCAAAAACTGCAGAAAACTTTCGAGCTCTTTGCACAGGGGAGAAAGGAACTGGAAAAAGTGGAAAGCCTCTCCATTACAAGGGCAGCACATTCCACAGGATTATTCCTAGCTTTATGATTCAAGGAGGTGATTTTACCCACGGCAATGGAATGGGGGGCGAGTCAATCTATGGAGAGAAGTTTGCTGATGAGAACTTCAAGCTGAAGCATACTGGACCAGGAATTCTGTCAATGGCAAACGCTGGCCCCGATACCAATGGTTCGCAATTTTTCATCACTACTGTGACAACTAGCTGGTTGGATGGAAGGCACGTCGTGTTCGGAAAAGTGATTTCTGGAATGGATGTGGTGTACAAGATCGAGGCTGAAGGAAGGCAAAGTGGCACTCCCAAGAGCAAGATCTTCATTGCTGATAGCGGTGAACTTCCATTGTAA 675 0.483 MATLTRGDSRRTRVCGRSVGMAKTALLLLWTLFLFGTLALIQAKKSKEDLKEVTHKVYFDIEIDGKPAGRVVMGLFGKAVPKTAENFRALCTGEKGTGKSGKPLHYKGSTFHRIIPSFMIQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGILSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVISGMDVVYKIEAEGRQSGTPKSKIFIADSGELPL 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1237 224 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 58 218 IPR002130 GO:0000413|GO:0003755
Lele03g1237 224 FunFam Peptidyl-prolyl cis-trans isomerase 50 223 - -
Lele03g1237 224 CDD cyclophilin_ABH_like 55 220 - -
Lele03g1237 224 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 182 197 IPR002130 GO:0000413|GO:0003755
Lele03g1237 224 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 111 123 IPR002130 GO:0000413|GO:0003755
Lele03g1237 224 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 169 181 IPR002130 GO:0000413|GO:0003755
Lele03g1237 224 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 75 90 IPR002130 GO:0000413|GO:0003755
Lele03g1237 224 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 154 169 IPR002130 GO:0000413|GO:0003755
Lele03g1237 224 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 58 221 IPR002130 GO:0000413|GO:0003755
Lele03g1237 224 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 56 222 - -
Lele03g1237 224 SUPERFAMILY Cyclophilin-like 53 222 IPR029000 -
Lele03g1237 224 Gene3D - 42 223 IPR029000 -
Lele03g1237 224 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 106 123 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1237 Lele-ChrLele03 7370030 7373495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1237 69 201 U-box Gene Family AT5G67530 46.269 3.20e-28 109