Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1232 ATGCCGACGCCGGTCAGCGTAGCAAGGCAATGCTTGACGGAGGAGGCCGCTCGCGCTTTGGACGACGCTGTGGCGGTTGCTCGCCGCCGCAACCATTCGCAGACAACTTCGCTTCATGCTATCTCTGCCTTGCTCGCCCTGCCTTCTTCCCCTCTCAGGGATGTTTGCACACGCGCGCGGAGCTGCTCATATTCCCCGCGTTTACAGTTCAAAGCTTTAGAGCTCTCTGTGGGTGTGTCTCTTGACAGATTGCCCACCACTAAGTCTCTCGAGGATGACCATCCTATATCCAATTCACTCATGGCCGCTATCAAGCGATCCCAAGCGAACCAGAGGAGGCATCCAGAGAGTTTTCATTTGATACAGATGCATATGCATCAGCAGCAGCAAGCGGCCTCGTTTTTGAAGGTGGAGCTCAAGCACTTCATGTTGTCCATTCTCGATGATCCGATTGTGAGCAGAGTTTTTGGGGAAGCTGGTTTTCGAAGCTGTGACATCAAGATTGCATTGCTTCAACCTCCTATAGCGCAAGCTTCTTCTCGATTCTTCCGGGGCCGTTACCCACCTTTATTTTTGTGCAATCTAACAGGTTCGGAAATGGATCGTCCAGGTTTCAACTTCCCTTCCATGACCAATCCTGGACACAAAGATGGAGACGAGGATTGTAGAAGAATTGCGGAGGTTCTTGTGAGGAAGACAAAGAAAAATCCCTTACTGATGGGTGTTTACGCGAAGGGTACTCTAATGAGATTCACTGACACTGTACAGAGAGGTCGGGTGGGTTTGTTGCCGGCTGATATTGCTGGGCTTAATATGATTTGCATTGAGAAGGAGATTGCTGAGTTTTTTGTTGAAAGTGGCAGTGAAGAGAAGATGGTTTTGAAATTTAAGGAATTGAGTCGTGCAGTCGAGCAGTGCTCAGGTCCGGGAATCATTGTGAATTTCGGAGAGCTTGAGGCATTCGTGGGCGATGGGGTGCCTAGTGCTGCTGTGAATTTTGTCGTCTCACAACTATCAAGCTTATTGGAAATCCATGGTGACAAATTATGGCTGGTAGGCGTGGCAGGAACCTCTGTTATATATTCCAAGTTTTTAACTATGTTCCCAACTGTGGAAAAGGATTGGGATCTGCATCTGCTGACCATGACATCTGCCTCCCCTTCAATTGAGGGGCTCTACTCTAAATCCAGTTTGATGGGGTCCTTTGTGCCATTTGGTGGTTTCTTTTCTACACCACCTGAATTCAAAAACCCAGTAAGCTGTACAAATCAATCTTCTGCAAGCTGTCATGCATGCAATGAGAAATATGAACAAGAAGTTGCTGATGTTTTGAAGGTAGGTCCTACAACTTCAGCATCTAGTCACTCAGTGAGCTTGCCTTGGTTGCAACAGGTTAATGTGGATAAAGATAAACGATTGGATGTTGCAAAGACTAATGAAGAATTCACAAGTTTGAATACTACTATGTTGGGATTGCAAAAGAAGTGGGCTGATAATTGTCAGCGTCTTCATCACAATGAGTCATTTCCTGACTTAAATATATCCCAAACAAAGGCTCAACATCCCTCTCTTGATGGTTTACAATTTGGTTTGGGTATTAGAGAAAGCAGCAATAAAGATCTATCAGTTGATCAAATCCAACATTGTAAACATGGTCTCTACATGCCTAAAGAGTTACATAGTATTTACCCATCAGAGCAAACGTTACATGTTTCTTCAGAAACTTCTGGCATTGATACAGGAACTGACAAGGGAGCAGTTGGTTCAAAGAGTCGGCAAACTGACGTGCAGAACCCTTGGGTTGCCCCTTCCCCTGTGGCCAGTATGAGTCAGGCTGATCACAGATCATCTTCCTCCCTTTCTTCTGTGATCACTGATTTGGGGTTGGGAACGCTATATACATCAGCAGCTCAGGAGCCAAATACCCCAAAAGTAAAAGATCATAGAGAGAGTATACGGCACTTTTCAGACTCCATTTCAGCTGATGTTGATGCTGTGAATGAAAATACTTCACACCAAATTGCTCAATCCTCTCCTTGCTCTGGTCCCATGGAAGGGAAACTGGATTCATTAGATTTCAAGTCACTTAACCAGCTTCTTGCTGAAAGAGTTAGCTGGCAAGCAGAGGCCATATCTGTCATCAACCGAACCATGTCCTGCTGTAGATGTGGCACCGGAAAGCATAGTGGTTCACATTCTAGAGCAGATGTATGGCTTGCTTTCCTTGGACCTGATAGAGTTGGAAAGAAGAAAATTGCTTTAGCACTTACAGATATAATATTTGGAAACACAGAAAAGCTAATCTCTGTGGATATGAGTTCCCAAGACAGAGGCTACCCATTAAATGTGGTTTTTGAAAGCCAAAAATCAATTTGTCATGACGTGCTACGAAGGAAGACAGTTGTGGACTATATTGCTGGGGAGTTGAGCAAACAACCCTATTCAGTTGTATTTATTGAAAATGTAGATAAAGCGGATTTCCTGGTGCAGAATAGTTTGCTCCAGGCAAGAAGAACAGGTAAATTTCCAGACTCACATGGCAGGGAAATCAGCGTCAGGAATGCAATCTTTATTGTAACTTCGAGTGTCTTCAAAGGCGAACACTCTTTCCTTCTGGAGAAGGAGCATGTGTTTTCTGAGGATAAAATCCTTGAAGCCCAAAGATGTCAAATGCAGTTATTACTCGGACATTCTTCTGAGGATACCATCAGAAGCAGCAACACAAATGTCAGGGTAACACTGGTGGGAAGAGAGGCCTCCAAATCAACAATCGTGAATAAAAGAAAACTGAGTGAAAGACGTGACTCTGTAGAACAAGTAGCCAAATGCAAGGTACAGAAACAGGTCCTAGAGACATCAAGATCTTATCTAGATTTGAATATGCCTCTCCAGGACGTTGATGAGGACTACTGGTTTGATGATTTCTGTAGTCAACTTGATGCCAGAATAACTTTTAAGCCGTTTGATTTCGATGCACTCGCCAAGAAAATCTTAAAAAGCATCAGTTCAAAGTTTCAGATGACATTTGGATCAGGGTTTAAGCTTGAAATTGAATATGAAGTCATGGCACAGATCCTAGCAGCCGCGTGGTTATCTGAGAAGAAAAGTGCTGTGGAGGATTGGGTTGAAGATGTACTCGGCAGAAGCTTCAATGAAGCCTTGAAGAAATACCAACCTGAACCTCAGAAGTCCATGAAACTAGTTACATGGGAAGGGATTTTTGTTGAAGAGCAAGCTCCAGGAGTATGCCTTCCTGCTAATATTAACCTCAAGTAA 3276 0.4417 MPTPVSVARQCLTEEAARALDDAVAVARRRNHSQTTSLHAISALLALPSSPLRDVCTRARSCSYSPRLQFKALELSVGVSLDRLPTTKSLEDDHPISNSLMAAIKRSQANQRRHPESFHLIQMHMHQQQQAASFLKVELKHFMLSILDDPIVSRVFGEAGFRSCDIKIALLQPPIAQASSRFFRGRYPPLFLCNLTGSEMDRPGFNFPSMTNPGHKDGDEDCRRIAEVLVRKTKKNPLLMGVYAKGTLMRFTDTVQRGRVGLLPADIAGLNMICIEKEIAEFFVESGSEEKMVLKFKELSRAVEQCSGPGIIVNFGELEAFVGDGVPSAAVNFVVSQLSSLLEIHGDKLWLVGVAGTSVIYSKFLTMFPTVEKDWDLHLLTMTSASPSIEGLYSKSSLMGSFVPFGGFFSTPPEFKNPVSCTNQSSASCHACNEKYEQEVADVLKVGPTTSASSHSVSLPWLQQVNVDKDKRLDVAKTNEEFTSLNTTMLGLQKKWADNCQRLHHNESFPDLNISQTKAQHPSLDGLQFGLGIRESSNKDLSVDQIQHCKHGLYMPKELHSIYPSEQTLHVSSETSGIDTGTDKGAVGSKSRQTDVQNPWVAPSPVASMSQADHRSSSSLSSVITDLGLGTLYTSAAQEPNTPKVKDHRESIRHFSDSISADVDAVNENTSHQIAQSSPCSGPMEGKLDSLDFKSLNQLLAERVSWQAEAISVINRTMSCCRCGTGKHSGSHSRADVWLAFLGPDRVGKKKIALALTDIIFGNTEKLISVDMSSQDRGYPLNVVFESQKSICHDVLRRKTVVDYIAGELSKQPYSVVFIENVDKADFLVQNSLLQARRTGKFPDSHGREISVRNAIFIVTSSVFKGEHSFLLEKEHVFSEDKILEAQRCQMQLLLGHSSEDTIRSSNTNVRVTLVGREASKSTIVNKRKLSERRDSVEQVAKCKVQKQVLETSRSYLDLNMPLQDVDEDYWFDDFCSQLDARITFKPFDFDALAKKILKSISSKFQMTFGSGFKLEIEYEVMAQILAAAWLSEKKSAVEDWVEDVLGRSFNEALKKYQPEPQKSMKLVTWEGIFVEEQAPGVCLPANINLK 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1232 1091 Gene3D - 674 953 IPR027417 -
Lele03g1232 1091 Pfam AAA domain (Cdc48 subfamily) 739 864 IPR003959 GO:0005524|GO:0016887
Lele03g1232 1091 SUPERFAMILY Double Clp-N motif 12 118 IPR036628 -
Lele03g1232 1091 MobiDBLite consensus disorder prediction 571 617 - -
Lele03g1232 1091 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 689 1027 IPR027417 -
Lele03g1232 1091 Gene3D - 10 172 IPR036628 -
Lele03g1232 1091 ProSiteProfiles Clp repeat (R) domain profile. 8 178 IPR004176 -
Lele03g1232 1091 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1060 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1232 Lele-ChrLele03 7316094 7320925 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1232 03 7316094 7320925 Lele25g1689 25 24569210 24573396 CCT
Lele03g1232 03 7316094 7320925 Lele26g1689 26 20424285 20428780 CCT
Lele03g1232 03 7316094 7320925 Lele27g0400 27 3629132 3633399 CCT
Lele03g1232 03 7316094 7320925 Lele28g1693 28 19864495 19868976 CCT
Lele03g1232 03 7316094 7320925 Lele03g1232 03 7316094 7320925 ECH
Lele03g1232 03 7316094 7320925 Lele25g1154 25 7459199 7465760 ECH
Lele03g1232 03 7316094 7320925 Lele26g1153 26 7446381 7451113 ECH
Lele03g1232 03 7316094 7320925 Lele27g0927 27 17204610 17210856 ECH
Lele03g1232 03 7316094 7320925 Lele28g1146 28 7438307 7444097 ECH
Lele03g1232 03 7316094 7320925 Lele04g1474 04 19938523 19943327 ECH
Lele25g1154 25 7459199 7465760 Lele03g1232 03 7316094 7320925 ECH
Lele26g1153 26 7446381 7451113 Lele03g1232 03 7316094 7320925 ECH
Lele27g0927 27 17204610 17210856 Lele03g1232 03 7316094 7320925 ECH
Lele28g1146 28 7438307 7444097 Lele03g1232 03 7316094 7320925 ECH
Lele01g1219 01 7353530 7358347 Lele03g1232 03 7316094 7320925 hybridization
Lele02g1489 02 19089372 19094181 Lele03g1232 03 7316094 7320925 hybridization