Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1231 ATGTGCAGTGGTTCCAAGAGCAAACCTTCTGAAGCAGGTTTCGTTATGGAGGGTGGTGAATATGGGAAACAAGAGGGGCTGCATCATAATAAGACTTCTGTGTTGCTTGAACTTGCAGCCTCAGATGATGTGAGTTTCAAAGATGCAGTTGAGCAAGAGGGTCTTGATGTTGATGAGGCGTGCTTATGGTATGGAAGGAGGATTGGCTTAAAGAAATTGAGCTATGAAGAGAGGACGCCTCTCATGATTGCTGCTATGTTTGGAAGCATGGCCGTATTACGTTATATACTCGGAACCGGTCGTGTTGATGTTAACCGGACTTGTGGATCAGATGGGGCTACCGCCCTTCATTGCGCTGTTGCTGGGGGTTCAGCCTCGTCCCCTGAGGTTGTTAAGCTCTTGCTTGATGCATGTGCTGATGTTAGTGCTGTTGATGCTAATGGTAACCAACCTTGTGACTTGATCGTCTCCGGGGTTAATTCAATCTTCAATTCGAGGAAGAGGATCCTACAAGCGATACTGAACGGTAAGGATGTTATTGATGACGGGGCATGTCTCTCATTTGAAGATACAGTTAGCCAGATTGAGGTACAGCAACAGCCAGATATGGCTGCATCTAAGAAAGATTATCCTATTGATCTTTCTCTTCCTGACATAAAGAGTGGGATTTATGGTACTGATGAGTTTAGGATGTATACATTCAAGGTAAAGCCTTGCTCAAGGGCTTATTCTCATGATTGGACTGAGTGCCCCTTTGTTCATCCTGGGGAAAATGCTAGGCGACGGGATCCTAGAAAATATCATTATAGCTGTGTTCCTTGCCCCGAGTTTCGGAAGGGATCATGCAGCAAGGGAGATGCTTGTGAGTATGCACATGGTATTTTCGAGTGCTGGCTTCACCCTGCCCAGTATCGGACCCGGCTTTGCAAGGATGAGGCTGCTTGCACCCGAAGAGTTTGCTTTTTTGCTCATAAGCTTGAGGAGCTTCGCCCGTTGTATCCTTGTACTGGTTCAGCTATACCTTCTCCCAGATCATCTTCATCAAGTTCTTGTTCATTGGATATGGGATCTTTTAGCCCTCTGTCGATGGGTTCTTCGTCTGTCATGATACCTCCAGTCTCAACACCGCCTCTGACTCCTTCTGGTGCATCTTCTCCCGTTGGCGGAACCATGTGGCAGGCCCAATCTAATGGTGGAGTGCCTACCCTGCAACTCCCAAGAAGCAGACTGAATACTGCTTCAAATGCTAGAGATGTCAATTTAGATATTGAGTTCCTCGGACTTGAAAATCACCGGCGTAGGCAGCAGATGATGATGGATGAGATTTCTGGTCTTTCATCACCATCAAGCTGGAATAATTCCATGCCTGATAATCATTCCTTTCCGGTCTCTTTCGGTGATCAAGCTGGGGAGCTGAATAATGGGCTTGCAGTAATGAAGCCTACAAACCTTGATGACATTTTCGGGTCAGTTGATCCATCAATTTTGCCTAAATTACAGGGGATTTCACTAGACACTGCTGGAACTCAGTTGCAATCTCCAACTGGGTTCCAGGCTCTTCAGAATGCGAACCTGCATCTGCGAAACTATTCTTCTGGCCTTTCCAATTCAAATGGGATGGGATCGCCGTCTTCTGTGAATGATCCACCTGTATCAGCAGCAACCACAATGGCCTTGAATGCAAGACTTGCTGCATTTTCTAAGAGAAGCCAGAGCTTTATTGAGCGCAGCAGCGCAGTAAACCGTCATCCAGAGCTTACTTCTCCGGTTTCTTCAACAACAAAGGCTTCTGCTGTCTTATCAGACTGGGGATCCCCTGATGGAAAGTTGGACTGGGGCATCCATGGAGAAGAGTTGAATAAGCTGAGGAAATCTGCTTCCTTCGGATTTCGAAGCAGTAGGAGTACCCGAGTACCAGCAAATCTCGATGAACCAGATGTTTCTTGGGTTCCTTCACTCGTAAAGGATGCGGCACCGCCAGAATCTGGTCAATTTAGTGTGGAAGAACAGCAAAAGCAGCAGCTACAATGCCATCGTAACAAAGGAACAGATGTAGTTCCAGCTTGGATGGAACAATTTAACATTGAGCAGGAGCAGATGGTAGCATGA 2109 0.4666 MCSGSKSKPSEAGFVMEGGEYGKQEGLHHNKTSVLLELAASDDVSFKDAVEQEGLDVDEACLWYGRRIGLKKLSYEERTPLMIAAMFGSMAVLRYILGTGRVDVNRTCGSDGATALHCAVAGGSASSPEVVKLLLDACADVSAVDANGNQPCDLIVSGVNSIFNSRKRILQAILNGKDVIDDGACLSFEDTVSQIEVQQQPDMAASKKDYPIDLSLPDIKSGIYGTDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPEFRKGSCSKGDACEYAHGIFECWLHPAQYRTRLCKDEAACTRRVCFFAHKLEELRPLYPCTGSAIPSPRSSSSSSCSLDMGSFSPLSMGSSSVMIPPVSTPPLTPSGASSPVGGTMWQAQSNGGVPTLQLPRSRLNTASNARDVNLDIEFLGLENHRRRQQMMMDEISGLSSPSSWNNSMPDNHSFPVSFGDQAGELNNGLAVMKPTNLDDIFGSVDPSILPKLQGISLDTAGTQLQSPTGFQALQNANLHLRNYSSGLSNSNGMGSPSSVNDPPVSAATTMALNARLAAFSKRSQSFIERSSAVNRHPELTSPVSSTTKASAVLSDWGSPDGKLDWGIHGEELNKLRKSASFGFRSSRSTRVPANLDEPDVSWVPSLVKDAAPPESGQFSVEEQQKQQLQCHRNKGTDVVPAWMEQFNIEQEQMVA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1231 702 ProSiteProfiles Zinc finger C3H1-type profile. 273 295 IPR000571 GO:0046872
Lele03g1231 702 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 293 IPR000571 GO:0046872
Lele03g1231 702 SMART ANK_2a 76 106 IPR002110 GO:0005515
Lele03g1231 702 SMART ANK_2a 111 143 IPR002110 GO:0005515
Lele03g1231 702 Gene3D - 29 173 IPR036770 -
Lele03g1231 702 PANTHER UNKEMPT FAMILY MEMBER 37 656 IPR045234 -
Lele03g1231 702 FunFam Zinc finger CCCH domain-containing protein 66 226 294 - -
Lele03g1231 702 SUPERFAMILY Ankyrin repeat 40 160 IPR036770 -
Lele03g1231 702 Coils Coil 690 702 - -
Lele03g1231 702 SMART c3hfinal6 268 294 IPR000571 GO:0046872
Lele03g1231 702 SMART c3hfinal6 303 326 IPR000571 GO:0046872
Lele03g1231 702 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Lele03g1231 702 Gene3D - 268 331 - -
Lele03g1231 702 Pfam Ankyrin repeats (many copies) 77 135 IPR002110 GO:0005515
Lele03g1231 702 ProSiteProfiles Ankyrin repeat region circular profile. 111 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1231 Lele-ChrLele03 7308419 7310527 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1231 33 697 C2H2 Transcription Factor Family AT5G12850 39.167 8.20e-142 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele03g1231 Ank_4 4.8e-10 CL0465