Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1226 ATGTCGTCTCGCGCTCTCCGAAGATTGAAGTTTAGAAGCAGAAACGGTTCAGAACCTAGTGGGGCCATATCAAAAGCTAGCATACATTCATATCTAGTTTTCAAAAGTTGGGTGCTCTACGTCACTCGACCGTATGGTTGCTCAAACCGGTCTTCAATGGCGGTGGAGGAATTGGAGTACCCTGGGTTCAGAAAGCGCAAACGAGGGTATGGAAGGAGAAAACTCGTCGTCAATGATAGAGTGGAGGTGAGGAGTATGGAGGATGGTTTTTTGGGTTCATGGCACCCAGGGACTGTTGTCCAATGTGGGAAGCAGATACGTTATGTAAAATATGACCATGTTTTAGATGATAATGGGTCAAAACATCTTGTCGATATAGTGAATGTTCCAGCTATTATGGATGGCGCCAGTTCCAAAATTTACAATGAACGTGGACTTATTAGACCAATACCACCTTTGAAGGAGTTTGGGTCATGGGACCTTCTGTTTGGTCTATGTGTTGATGCATACTGTCTTGAAGCTTGGTGGGAAGGTGTTATTTTTGATCATTATGATGGGAAAGAGGAGAGATCTGTATTTTTCCCAGATTTGGGCGATGAAATGAAGATAAAAATTGATCATTTGCGTATTACTCATGACTGGAGTGAAGTTACTGGGAAATGGGAGAGGCGGGGCATGTGGGTATTTCTTGAATTGGTTGAAGAGTTGGAACTGGATAATTATGTTGCAGTTTCATTAAAGCAAATCTGGTATGATGTGCGTGCCAAAGAAGATTTCCATAAGATTAAAGACTGGACTTGTAATGTGAAAGACGTGTGGAGAGGTCTCGTACTAGAGGTAATTAATGACTACTTTTCACTTACACTGACAGAAGTCTTGGATCTTTCAAAAGATCTCTTGACAGAAGCACCAGAACCAGAGTCAGGTGAACCTACTGCGGATATTCATTTAAATCCAGAAAGAAATTCAGACAACTTTGATTCTGTTTCAAATTCTGATAATCAGATAACTAGCAACTCAAATCTTCTTTATGATGCCGGTCCTAGTAATGCAATTGTCCATGACATAAGTTTGGCTGAGAACCATTTGGAAAAAGGCGATGTGTCAAATTTCTTGGATGCTGATCAAAACGGTGGTAGCATCATTCTTATCCAGGAGAAATATGATTTGGAGACCTTGGAGGACGGAGTGTCAAATATGACTGAGAAGGAAGGTCTGGTGCAGAAGGAATCTATATCACCTGATGAAGAGATGTTACCAGATATTCCTGAAGGAATTTCTGGGCAGGATGCTGGTACTTCTGGTGAAGTAAATTATGGTGCTGGGTGTCATAAAAGAAATAGACAAGGGGGATTATCAACTCGCAGAAGGGCGACTGATTGGGAACCTCTGATACTTTCTGAAGTTGAACTCTGCCCTGATTCTGTTCATCAATATGCACTTGCATCTAATAAGAGGACGATCAGGGAACAACAGAAGACAAATGTCAGAAAACATATCGCATATCTTGGATGGAAAATTGAGTGGAGGCAACCCAAAAGTGATTATAAAAAAAGGCAATATAGGTACACCTCACCTGAGATACAGGGAAAGCAGGTTGTTTACATGTCACTTTGTGAAGTTTGTAAACATATTGAAAAGGGCACCAATGTGGACTCTTTGTGGTCCCATGAGGATAAAAAAAGGATGCGTCCTACAATTGACAATAATATTTCACATCCTGCAATTTTGCCACCTCCTTCTGGTGAAGACAAAGTGGAACCCGAATTTTGCCCTGAAGCTGTTTTGAGATATTACTTGCTTCTATATAAGAAGGGCCCCAATAATGTTAGAACATTTATAATATCAAAGGCAAGAAAACACCTGTTAGCAGAAGGATGGAATTTTGAGTATCCAACAATAAGAGGAAGGGCAATAATCTACATTTCACCGCAAAATCAGCATTTTTCCTCCCTTAGAGTAGCATGTGGAGAATGTATTAAAGAATGTCTTCCTAAGTGGATTAGTTCGGGAATGATACCTCTGGATGTTTCAAGCATAAATGAAGAGAACACTGGTCCGGTTGACAGTGATAAATTATTGTGTTGTGTGTCCCAATTGCTTCAGAAGGAGCCTGAATTGTATTGTGTAAACGGTGCACCAGCAAGCAGATCAATTGTGCAATGCAAGCCAAAGTCCCAAGAAAATCAGCGAAGGATGCATTCTACAATTGACAGTAATATCTCACTTCCTGAAATTTTGCCACCTCCTTCTGTTGAAGATGTAATTGAACCTGAATTTTGTCCTAAAGCTGTTTTGAGATATTACATATATTCATCAGAGAAGAGCCTCAAGGGTGTTAAAAAACATATGATACTGAAGGCAAGAAAACACCTGTTAGCAGAAGGATGGAAGCTTGAGTATCCAACCATTAGAGGAAAGGGAATGATCTACATTTCACCACAAAATCTGCGTTTTGGCTCACTTCGAGTAGCGTGTGGAGCATGTATTAAAGAATGTCTATCTGAGTGGGTTAGTTCTGCAAGGATGCCTCCAGATGGTTTGGGCATAAATGAAGAGAAAATGAGTCAGGTTGACCGTAATAAACTATTGTGCTATGTGTCCCAATTGCTTCAAAAAGAGCCTGAATTGTCTGATTTAAGTGGGGTACCAGAAAGCATATCAACTGGGCATTGCAAGCTCAAACCCTCCAGGAATCTAAAGTCCAGGCCACCTAAGCTCCAGAAAAAAAGATTACCTATTTGGTTACAAAGATCAAGCAAAAGGGTCCAGAAGGTCTGTGCTCCTTGTCCATCACACCAGAAAGCTCAAAATGTCCTGTCCTGGTTAATAGACTGCAATGTGTTGTTACCAAGGTCTAAGGTCCATTATCGGGAAAGAGGAATGGGTCGTTCTATGGCTGAGGGGCGAATAACTCGTGATGGGATCAAGTGCAGCTGTTGTCAGAAGCTATATAGTCTTGGTAGCTTTGAAGGTCATGCCACTGGTCGTCGTAATTGCAGGTCAGCAGCTGCTAATATTGTTTTGGAAAATGGCAAGTCACTCCTAGATTTCCAGATGCAGATAATGAATGAGCATCGGACAACAGGAACTACGCAAACACCACCGAAAAGTGTATATCAAGAAGATAATGATGGAATTTGTTCTGTTTGTCAATATGGCGGTGAACTAATATTATGTGATAATTGCCCGTCATCTTTTCATAAAAGCTGCCTAGGTTTGGAGGATATCCCTGAAGGGGACTGGTTTTGCCCATCATGTTGTTGTGGAATTTGCCACCAAAGTAAAACTGAAGGGGCTGATGATGAAAAACTTTTGACTTGCAGTCAGTGTGAACATAAATTTCATGCCAAGTGCTTGGGAAAAGGGTCTGTAACGATGTCAGGAAGATATATGAAAAATTGGTTTTGTGGAAAAAGCTGCGAAAAGATATATGTAGGCCTTCATAAGCTATTAGGAGAACCTGTTGCAGTGGGCGCAAACAATTTAAACTGGACTTTGTGGAAGTGTGTTGGCTCTGAGAATTGTGATCTTGGGAATGGTAGAAATGACCTAGAGGTAGAGAGTTACAGCAAACTCAATGTGGCTCTTTCAGTGATGCATGAATGTTTTGAGCCCTTGAAGGAATCTTACTCAGGCAGGGATCTCATGGAAGATGTTATTTTCAGCAGATGGTCAAAGCTTAATCGATTGAACTTCCAAGGTTTCTATATTGTACTTCTGGAGAGAAATGAAGAAGTGATAACTGTGGCAACTGTTAGGGTCTATGGAGAGAAGGTAGCAGAAGTACCTCTTGTTGGAACCAGATTTCAGTATCGTCGCCTTGGAATGTGTCGCATTTTAATGGACGAGCTTGAAAAGAGGCTCATGCAGCTAGGGGTGGAGAGGATAGTTTTGCCTGCTGTTCCAAGTGTGCTAGACACGTGGACCAATTCTTTTGGCTTTTCAAAGATGATAAATTCTGAGAGATCACAGTTTCTGGACTGTACTTTTCTTGACTTTCAAGATACCGTCATGTGCCACAAACTTTTGACCAAGACTCGTACAGCTTTAGTTTTGTCAACGGTGAGACATACAAAACTACATGATGTTTTATCTGTAAGTGGTGGTACTGGTTTTGATCAACCCAGTCCAGCATCTGAAGTATATCAAGCGGAAGAGATTGACGACAGAAATGAGACGTTGGATCTACAGATGGTGGATGCTTTTGCCGGCGACAACAATGATTGTCTTGGTAATGATGCCCATAGTCCAGTTGTTTTGGCAAAGCCGGCAAATTCTGAGGGCGAACAATTGCAGAACAGAAGCATTCCAGAATGCTCACTTGAAGAAGGCCGCTTAAAACATGTTTCCGCCAGTAATGTGGAATGTTCTGCAATGGCTACTTGTGGTGTTTTACGCTCATTTTTTGCTCTTGTTCTACTAGTTTGTCTTCAATGGCGTTTAGCTGCATCTTCAGGTTTGTTACCCTTCAGAAACCACCACCACAACCGCTCATCTCACCACCATCATGGACACAATATGATCCAAGCCAACAAATCTTGTCCTTTGTTCGTGGGCACTTGGGTTCGTGATGAAACTTACCCGCTTTACCAATCTTCTGACTGTCCAATCATTGACGCTGAATTCAACTGTCAAATGTACGGTCGCCCAGATTCTGATTACCTCAAATACAGATGGAAGCCCCTTGATTGCGAGCTCCCAAGGTTCAATGGGATTGAGTTTTTGCTGAATATGAAGGGCAAAACTGTGATGTTTGTGGGTGACTCCCTGGGACGCAACCAATGGCAGTCATTAATTTGTATGATATATGGTGCAGTGCCTCGGGCAAAAACGCAAATGGTCAGGAGAGACCCACTTTCAACCTTCAGATTCTTGGACTATGAAGTGACACTTTCATTCTACAGATCTCCATATCTGGTAGACGTTGAAGTGATGGGAGGGAAGAGAGTTCTAAGGCTGGATGAGGTAGATGGGAATGGTGAAGCATGGAGGAATGCTGATGTACTGTCCTTTAACACAGGACATTGGTGGACTCATGAAGGATCCCTTCAAGGATGGGATTATGTTGAATTAAGAGGCAAATTCTATCCAGACACGAACCGTTTGGCAGCTTTAGAAATAGGTCTCAAAACTTGGGCTAATTGGGTGGAAGCTAATATTGATAGAAGCAGAACTCAAGTGTTCTTCCAAGCCATTTCTCCCACACATTACAACCCCAGAGAATGGAATGGGATAGGGAAAACAGAAACAACAACAAAGAATTGCTATGGGGAAACAGCACCGATAAGGAGCACGACATACCCAGGAGCATATCCAGAGCAGATGAGGATACTGGAGATGGTGATAAAGGGAATGGCAAGGCCTGCATATTTGCTTGACATTACAATGCTATCAGCTCTGAGGAAAGATGGCCATCCTTCTATTTATAGTGGTGATTTCAGTAATCAGCAGAGGGCTAACCCTGACTTGTCTGCAGATTGCAGCCATTGGTGCCTTCCTGGCTTGCCTGATACTTGGAATCAACTCTTCTATACTGCCTTGCCTGCATATGGCAATGCCACTCAGATCTGGATAAACTTGATGAATGAGCTTTACAATGAGAAAATATTCATCCAGTAG 5622 0.42 MSSRALRRLKFRSRNGSEPSGAISKASIHSYLVFKSWVLYVTRPYGCSNRSSMAVEELEYPGFRKRKRGYGRRKLVVNDRVEVRSMEDGFLGSWHPGTVVQCGKQIRYVKYDHVLDDNGSKHLVDIVNVPAIMDGASSKIYNERGLIRPIPPLKEFGSWDLLFGLCVDAYCLEAWWEGVIFDHYDGKEERSVFFPDLGDEMKIKIDHLRITHDWSEVTGKWERRGMWVFLELVEELELDNYVAVSLKQIWYDVRAKEDFHKIKDWTCNVKDVWRGLVLEVINDYFSLTLTEVLDLSKDLLTEAPEPESGEPTADIHLNPERNSDNFDSVSNSDNQITSNSNLLYDAGPSNAIVHDISLAENHLEKGDVSNFLDADQNGGSIILIQEKYDLETLEDGVSNMTEKEGLVQKESISPDEEMLPDIPEGISGQDAGTSGEVNYGAGCHKRNRQGGLSTRRRATDWEPLILSEVELCPDSVHQYALASNKRTIREQQKTNVRKHIAYLGWKIEWRQPKSDYKKRQYRYTSPEIQGKQVVYMSLCEVCKHIEKGTNVDSLWSHEDKKRMRPTIDNNISHPAILPPPSGEDKVEPEFCPEAVLRYYLLLYKKGPNNVRTFIISKARKHLLAEGWNFEYPTIRGRAIIYISPQNQHFSSLRVACGECIKECLPKWISSGMIPLDVSSINEENTGPVDSDKLLCCVSQLLQKEPELYCVNGAPASRSIVQCKPKSQENQRRMHSTIDSNISLPEILPPPSVEDVIEPEFCPKAVLRYYIYSSEKSLKGVKKHMILKARKHLLAEGWKLEYPTIRGKGMIYISPQNLRFGSLRVACGACIKECLSEWVSSARMPPDGLGINEEKMSQVDRNKLLCYVSQLLQKEPELSDLSGVPESISTGHCKLKPSRNLKSRPPKLQKKRLPIWLQRSSKRVQKVCAPCPSHQKAQNVLSWLIDCNVLLPRSKVHYRERGMGRSMAEGRITRDGIKCSCCQKLYSLGSFEGHATGRRNCRSAAANIVLENGKSLLDFQMQIMNEHRTTGTTQTPPKSVYQEDNDGICSVCQYGGELILCDNCPSSFHKSCLGLEDIPEGDWFCPSCCCGICHQSKTEGADDEKLLTCSQCEHKFHAKCLGKGSVTMSGRYMKNWFCGKSCEKIYVGLHKLLGEPVAVGANNLNWTLWKCVGSENCDLGNGRNDLEVESYSKLNVALSVMHECFEPLKESYSGRDLMEDVIFSRWSKLNRLNFQGFYIVLLERNEEVITVATVRVYGEKVAEVPLVGTRFQYRRLGMCRILMDELEKRLMQLGVERIVLPAVPSVLDTWTNSFGFSKMINSERSQFLDCTFLDFQDTVMCHKLLTKTRTALVLSTVRHTKLHDVLSVSGGTGFDQPSPASEVYQAEEIDDRNETLDLQMVDAFAGDNNDCLGNDAHSPVVLAKPANSEGEQLQNRSIPECSLEEGRLKHVSASNVECSAMATCGVLRSFFALVLLVCLQWRLAASSGLLPFRNHHHNRSSHHHHGHNMIQANKSCPLFVGTWVRDETYPLYQSSDCPIIDAEFNCQMYGRPDSDYLKYRWKPLDCELPRFNGIEFLLNMKGKTVMFVGDSLGRNQWQSLICMIYGAVPRAKTQMVRRDPLSTFRFLDYEVTLSFYRSPYLVDVEVMGGKRVLRLDEVDGNGEAWRNADVLSFNTGHWWTHEGSLQGWDYVELRGKFYPDTNRLAALEIGLKTWANWVEANIDRSRTQVFFQAISPTHYNPREWNGIGKTETTTKNCYGETAPIRSTTYPGAYPEQMRILEMVIKGMARPAYLLDITMLSALRKDGHPSIYSGDFSNQQRANPDLSADCSHWCLPGLPDTWNQLFYTALPAYGNATQIWINLMNELYNEKIFIQ 1873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1226 1873 Pfam PHD-finger 1047 1088 IPR019787 -
Lele03g1226 1873 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1216 1305 IPR016181 -
Lele03g1226 1873 MobiDBLite consensus disorder prediction 318 332 - -
Lele03g1226 1873 Pfam Agenet domain 78 152 IPR008395 -
Lele03g1226 1873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1012 1089 IPR013083 -
Lele03g1226 1873 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 1567 1846 IPR026057 GO:0016740
Lele03g1226 1873 SMART PHD_3 1089 1141 IPR001965 -
Lele03g1226 1873 SMART PHD_3 1047 1088 IPR001965 -
Lele03g1226 1873 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1090 1144 IPR013083 -
Lele03g1226 1873 CDD NAT_SF 1238 1299 - -
Lele03g1226 1873 SUPERFAMILY FYVE/PHD zinc finger 1035 1087 IPR011011 -
Lele03g1226 1873 MobiDBLite consensus disorder prediction 302 332 - -
Lele03g1226 1873 CDD PHD1_AIRE 1048 1087 - -
Lele03g1226 1873 PANTHER PHD FINGER PROTEIN 12 757 1417 IPR042163 GO:0003714|GO:0045892
Lele03g1226 1873 Pfam Tify domain binding domain 969 1021 IPR032308 -
Lele03g1226 1873 SMART ring_2 1048 1087 IPR001841 -
Lele03g1226 1873 SMART ring_2 1089 1144 IPR001841 -
Lele03g1226 1873 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1183 1344 IPR000182 GO:0016747
Lele03g1226 1873 ProSiteProfiles Zinc finger PHD-type profile. 1045 1090 IPR019787 -
Lele03g1226 1873 SMART agenet_At_2 159 216 IPR014002 -
Lele03g1226 1873 SMART agenet_At_2 73 134 IPR014002 -
Lele03g1226 1873 Pfam PMR5 N terminal Domain 1514 1566 IPR025846 -
Lele03g1226 1873 Gene3D - 1196 1317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1226 Lele-ChrLele03 7252443 7268149 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1226 84 293 PHD Transcription Factor Family AT5G58610 46.262 1.55e-56 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele03g1226 PC-Esterase 2.8e-92 CL0264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1226 03 7252443 7268149 Lele25g1685 25 24481171 24491055 CCT
Lele03g1226 03 7252443 7268149 Lele27g0403 27 3703462 3713054 CCT
Lele03g1226 03 7252443 7268149 Lele28g1687 28 19784625 19791341 CCT
Lele03g1226 03 7252443 7268149 Lele03g1226 03 7252443 7268149 ECH
Lele01g1213 01 7290296 7304754 Lele03g1226 03 7252443 7268149 hybridization
Lele02g1484 02 19039904 19042677 Lele03g1226 03 7252443 7268149 hybridization