Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele03g1223 | ATGGCAGCAAATGCTCCTATCGCCATGAAAGAGGCATTAACGTTGCCAAGCCTTGGAATAAATTCGCAATTCATTACGTTTAATCATGTGACGATGGAATCGGATAAGTACATATGTGTGAGGGAAACATCCCCTCAGAACAGTATTGTTATTGTCGATATGAATATGCCCATGCAGCCTTTGCGACGGCCCATTACTGCTGATTCTGCTTTGATGAACCCTAATACTAGAATTCTTGCTCTCAAAGCTCAAGTTCCGGGGACCACTCAGGATCATTTGCAAGTGTTTAACATAGAAATGAAAGCAAAGATAAAATCACATCAGATGACTGAGCAGGTTGTCTTTTGGAAGTGGATATCCCCAAAGGTGCTGGGTTTAGTCACTCAAACCTCTGTTTATCACTGGTCTATTGAAGGTGATAGTCAGCCAGTGAAGATGTTTGACCGAACAGCTACGCTGGCCAATAATCAAATTATCAATTATCGTGCTGATCCTAGTGAAAAGTGGCTAGTTTTGATTGGAATTGCTCCTGGATCACCTGAGAGACCACAGCTAGTGAAAGGAAACATGCAACTCTTCTCCGTGGAACAGCAACGTAGTCAGGCTCTTGAAGCACATGCTGCATCTTTTGCCACTTTTAGGGTTCCGGGCAATGATAAGGATTCAACTCTCATTACTTTCGCATCAAAGACTGTTAATGCAGGACAGGTCACATCGAAGATGCATGTTATCGAACTTGGTGCCCAGCCAGGAAAACCATCATTTACTAAGAAACAAGCGGATCTCTTCTTCCCTCCAGATTTTGCTGATGACTTTCCCGTGTCAATGCAGATTTCGAATAAATATGGATTGATATATGTCATCACAAAGCTTGGAATTCTATTTGTCTATGATTTGGAGACCGCTACGGCAGTTTATAGAAACCGGATTAGTCCTGATCCTATATTTTTGACTACAGAAGCTTCATTATCAGGGGGCTTTTTGGCTATTAATAGACGTGGTCAGGTGTTGCTTGCCACTGTAAATGAGGCAACCATTATACCGTTTGTTAGTGGCCAGTTGAACAATTTGGAACTTGCTGTTAATCTTGCAAAAAGAGGAAACCTTCCTGGTGCAGAAGATCTGGTTGTTGCACGCTTTCAAGAATTGTTTGCTCAAACCAAGTATAAGGAAGCTGCAGAGCTTGCTGCAGAATCTCCACAAGGAATACTTCGTACTCCTGAAACTGTTGCTAAATTTCAGAGTGTACCTGTGCAAGCTGGGCAAACACCACCATTATTGCAGTACTTTGGAACTCTTTTAGCCAGGGGAAAGCTCAATGTTTTTGAATCCCTGGAGCTGTCAAGGCTTGTGGTAAATCAGAACAAAAAAAATCTTTTGGAAAATTGGTTAGCAGAGGACAAACTTGAATGTAGTGAGGAACTTGGTGACCTTGTGAAGACTGTGGACAATGATCTCGCATTGAAAATATATATTAAAGCCAGAGCCACACCAAAAGTTGTTGCTGCTTTTGCTGAGAGGAAAGAATTTGACAAGATTCTGATATATTCAAAGCAGGTTGGATACACACCTGATTACTTGTTCCTGCTTCAAACAATCTTACGAGCAGATCCCCAGGGTGCTGTTAATTTTGCTTTGATGATGTCTCAAATGGACAGGGGTTGCCCAGTTGACTACAACACAATAACGGATCTCTTTCTTCAGAGGAATTTAATTCGTGAGGCAACTGCATTTCTGTTGGATGTGCTGAAGCCTAATCTACCTGAACATGGTCATCTTCAAACAAAGGTGCTGGAAATTAATCTTGTGACATTTCCAAATGTTGCTGATGCCATATTGGCCAATGGCATGTTCAGTCATTATGATCGCCCACGTATTGCACAGTTATGTGAAAAGGCGGGCCTTTTTATACGTGCTCTTCAGCATTATACCGAGTTACCTGACATCAAACGTGTCATTGTCAATACTCATGCCATCGAGCCGCAGGGCCTAGTTGAGTTCTTTGGGACCCTTTCCAGAGAATGGGCGCTTGAGTGCATGAAAGATCTGCTGCTGGTTAATCTGAGGGGTAATCTTCAAATAATTGTGCAGACTGCTAAGGAATATTCTGAGCAGCTGGGAATGGATGCATGTATTAAACTCTTCGAGCAATTCAAGTCATATGAAGGACTCTACTTTTTCTTGGGTTCATTTTTGAGCTCCAGTGAAGATCCTGATATTCACTTCAAGTACATTGAAGCAGCTGCAAAAACTGGACAACTTAAGGAGGTAGAGCGTGTTACTCGAGAATCGAACTTTTATGATCCGGAGAAGACAATGAATTACTTAATGGAGGCCAAGCTTCCAGATGCACGGCCATTGATTAATGTGTGTGATCGGTTTGACTTTGTTCCGAGTCTCACCCACTATCTCTATACCAACAACATGCTTCGCTATATTGAAGGCTATGTGCAAAAGGTCAATCCGGGAAATGCTCCTCTAGTTGTCGGACAGTTGTTAGATGATGAATGCCCTGAAGATTTTATTAAAGGTCTTATACTTTCAGTACGCTCACTTCTGCCGGTTGAGCCTTTGGTTGAAGAATGCGAGAAGAGGAATCGTCTCCGCTTACTTACTCAGTTCTTGGAGCATCTCGTGAGTGAGGGAAGCCAGGATGTACATGTGCATAATGCTCTTGGTAAAATAATTATTGACAGCAACAACAATCCAGAGCATTTTCTCACCACCAACCCATATTATGATTCTCGTGTTGTTGGTAAATATTGTGAGAAGCGAGATCCCACCCTTGCTGTTGTTGCTTACCGAAGAGGGCAATGTGATGATGAGCTTGTTAATGTTACAAATAAGAATTCCTTGTTTAAACTCCAAGCCAGATATGTTGTGGAAAGAATGGATTCTGACCTCTGGGAGAACGTTCTGAATCCTGAGAATGAGTATAGGAGGCAGTTGATTGATCAAGTGGTCTCCACTGCTTTGCCTGAAAGCAAGAGTCCTGATCAAGTTTCAGCTGCAGTTAAAGCTTTTATGACTGCAGATCTTCCCCATGAATTAATTGAGCTTCTTGAGAAGATTGTGCTGCAAAATTCTGCCTTTAGTGGAAATTTTAATTTGCAAAATCTGCTCATCCTTACGGCTATCAAGGCAGATCCATCAAGAGTTATGGATTACATTAACAGGCTGGACAACTTTGATGGACCTGCAGTAGGAGAATTGGCAGTTGAAGCACAACTATACGAAGAGGCATTTGCCATCTTCAAGAAATTTAATTTGAATGTTCAGGCTATTAATGTTCTGCTAGATAATCTTCGGAGCATTGATCGAGCTGTAGAGTTTGCTTTCCGGGTTGAAGAAGATGCTGTATGGAGCCAGGTTGCTAAGGCACAACTAAGAGAAGGTTTTGTGAGTGATGCAATCGAGTCTTTTATACGTGCAGATGATGTCACTTGCTTCTTGGAGGTTATAAAGGCTGCTGAAGATACAAATGTGTACCATGACCTGGTAAGGTATCTTCTTATGGTTAGGCAGACGACAAAAGAACCCAAAGTGGATGGTGAGCTCATTTATGCATATGCAAAAACTGATCGGCTTGGAGAAATTGAGGAGTTTATATTGATGCCAAATGTTGCTAATCTTCCAAATGTTGGAGACCGTTTGTACGACGAGGCCCTGTATGAGGCAGCAAAGATCATATTTGCATTTATTTCTAATTGGGCTAAGCTAGCAGTCACATTGGTGAAGCTTCAACAATTCCAGGGTGCTGTTGATGCAGCCAGGAAAGCAAACAGTTCAAAGACATGGAAGGAAGTTTGTTTTGCTTGTGTTGATGCTGAAGAATTCCGCTTGGCTCAGATCTGTGGTCTCAATATCATTATTCAGGTCGATGATTTGGAAGAGGTTAGTGAGTATTATCAGAACGGAGGATGCTTTAACGAACTCATATCACTAATGGAAAGTGGTCTAGGATTGGAACGTGCACACATGGGTATCTTTACTGAGTTGGGAGTTCTGTATGCAAGATATCGTCATGAGAAGCTAATGGAGCACATCAAGTTATTCTCTACTCGTCTCAATATTCCCAAGCTTATCCGGGCCTGTGATGAACAGCAGCACTGGAAGGAACTTACATACTTGTATATCCAATATGATGAGTTTGATAATGCTGCAACCACTGTGATGAATCACTCTCCAGAAGCATGGGATCATATGCAATTTAAAGATGTTATAGTTAAAGTCGCAAGTGTGGAGCTCTACTACAAGGCTGTTCACTTTTACTTGCAAGAACATCCTGATCTCCTGAATGATGTTCTCAATGTGCTTGCCCTTCGTGTTGACCATACTCGTGTAGTGGATATAATGCGGAAGGCGGGCCACCTTCGATTAGTGAAGCCATACATGATTGCAGTTCAAAGCAACAATGTGGCTGCTGTTAATGAAGCGTTGAATGAAATTTACGTTGAGGAGGAGGACTATGACAGACTTCGTGAATCAATAGATTTGCATGACAACTTTGATCAGATAGGTCTTGCACAGAAGATTGAGAAGCATGAGCTTCTTGAGATGAGGCGTGCTGCATCTTATATTTATAAGAAGGCGGGAAGATGGAAGCAGTCCATTGCTTTGTCAAAGAAAGACAATCATTACAAGGACTGTATGGAGACCTGCTCTCAATCTGGTGACCGCGAACTTTCAGAGGAGCTGCTAGTCTACTTTATTGAGCAGGGGAAGAAAGAGTGCTTTGCTTCTTGCCTCTTTGTTTGCTATGATGTAATACGGCCGGATGTTGCACTTGAGCTGGCATGGATGAATAATATGATCGATTTTGCCTTCCCATATCTCTTGCAGTTTATTCGAGAGTATGCAAGTAAGGTAGATGAGCTTATCAAGGACAAAATTGAGGCTCAAAATGAGGAGAAGGCTAAGGAGAAGGAGGAGAAAGAAACAATTGCTCAGCAGAATATGTATGCTCAGTTGCTACCACTTGCTTTGCCTGCACCACCAATGCCAGGAATGGGCGGAGGTTTTGCTCCCCCACCCCAACCAGCTATGGGTGGAATGGGGATGCCACCAATGCCTCCTTTTGGCATGCCCCCCATGGGCTACTGA | 5103 | 0.4245 | MAANAPIAMKEALTLPSLGINSQFITFNHVTMESDKYICVRETSPQNSIVIVDMNMPMQPLRRPITADSALMNPNTRILALKAQVPGTTQDHLQVFNIEMKAKIKSHQMTEQVVFWKWISPKVLGLVTQTSVYHWSIEGDSQPVKMFDRTATLANNQIINYRADPSEKWLVLIGIAPGSPERPQLVKGNMQLFSVEQQRSQALEAHAASFATFRVPGNDKDSTLITFASKTVNAGQVTSKMHVIELGAQPGKPSFTKKQADLFFPPDFADDFPVSMQISNKYGLIYVITKLGILFVYDLETATAVYRNRISPDPIFLTTEASLSGGFLAINRRGQVLLATVNEATIIPFVSGQLNNLELAVNLAKRGNLPGAEDLVVARFQELFAQTKYKEAAELAAESPQGILRTPETVAKFQSVPVQAGQTPPLLQYFGTLLARGKLNVFESLELSRLVVNQNKKNLLENWLAEDKLECSEELGDLVKTVDNDLALKIYIKARATPKVVAAFAERKEFDKILIYSKQVGYTPDYLFLLQTILRADPQGAVNFALMMSQMDRGCPVDYNTITDLFLQRNLIREATAFLLDVLKPNLPEHGHLQTKVLEINLVTFPNVADAILANGMFSHYDRPRIAQLCEKAGLFIRALQHYTELPDIKRVIVNTHAIEPQGLVEFFGTLSREWALECMKDLLLVNLRGNLQIIVQTAKEYSEQLGMDACIKLFEQFKSYEGLYFFLGSFLSSSEDPDIHFKYIEAAAKTGQLKEVERVTRESNFYDPEKTMNYLMEAKLPDARPLINVCDRFDFVPSLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELVNVTNKNSLFKLQARYVVERMDSDLWENVLNPENEYRRQLIDQVVSTALPESKSPDQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKADPSRVMDYINRLDNFDGPAVGELAVEAQLYEEAFAIFKKFNLNVQAINVLLDNLRSIDRAVEFAFRVEEDAVWSQVAKAQLREGFVSDAIESFIRADDVTCFLEVIKAAEDTNVYHDLVRYLLMVRQTTKEPKVDGELIYAYAKTDRLGEIEEFILMPNVANLPNVGDRLYDEALYEAAKIIFAFISNWAKLAVTLVKLQQFQGAVDAARKANSSKTWKEVCFACVDAEEFRLAQICGLNIIIQVDDLEEVSEYYQNGGCFNELISLMESGLGLERAHMGIFTELGVLYARYRHEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDNAATTVMNHSPEAWDHMQFKDVIVKVASVELYYKAVHFYLQEHPDLLNDVLNVLALRVDHTRVVDIMRKAGHLRLVKPYMIAVQSNNVAAVNEALNEIYVEEEDYDRLRESIDLHDNFDQIGLAQKIEKHELLEMRRAASYIYKKAGRWKQSIALSKKDNHYKDCMETCSQSGDRELSEELLVYFIEQGKKECFASCLFVCYDVIRPDVALELAWMNNMIDFAFPYLLQFIREYASKVDELIKDKIEAQNEEKAKEKEEKETIAQQNMYAQLLPLALPAPPMPGMGGGFAPPPQPAMGGMGMPPMPPFGMPPMGY | 1700 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele03g1223 | 1700 | FunFam | Clathrin heavy chain | 458 | 786 | - | - | |
| Lele03g1223 | 1700 | FunFam | Clathrin heavy chain | 1053 | 1195 | - | - | |
| Lele03g1223 | 1700 | Gene3D | - | 1 | 376 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Lele03g1223 | 1700 | FunFam | Clathrin heavy chain | 1541 | 1637 | - | - | |
| Lele03g1223 | 1700 | Pfam | Clathrin propeller repeat | 19 | 55 | IPR022365 | - | |
| Lele03g1223 | 1700 | Pfam | Clathrin propeller repeat | 153 | 196 | IPR022365 | - | |
| Lele03g1223 | 1700 | SUPERFAMILY | ARM repeat | 1195 | 1530 | IPR016024 | - | |
| Lele03g1223 | 1700 | SUPERFAMILY | Clathrin heavy-chain terminal domain | 4 | 342 | IPR016025 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Lele03g1223 | 1700 | SMART | CLH_2 | 699 | 841 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | SMART | CLH_2 | 846 | 985 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | SMART | CLH_2 | 550 | 692 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | SMART | CLH_2 | 1436 | 1595 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | SMART | CLH_2 | 1287 | 1433 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | SMART | CLH_2 | 1141 | 1282 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | SMART | CLH_2 | 992 | 1137 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | FunFam | Clathrin heavy chain | 901 | 1052 | - | - | |
| Lele03g1223 | 1700 | FunFam | Clathrin heavy chain | 1196 | 1535 | - | - | |
| Lele03g1223 | 1700 | Pfam | Clathrin, heavy-chain linker | 343 | 366 | IPR015348 | GO:0005198|GO:0006886|GO:0016192|GO:0030130|GO:0030132 | |
| Lele03g1223 | 1700 | Coils | Coil | 1616 | 1651 | - | - | |
| Lele03g1223 | 1700 | Pfam | Region in Clathrin and VPS | 1291 | 1431 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | Pfam | Region in Clathrin and VPS | 1152 | 1280 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | Pfam | Region in Clathrin and VPS | 1439 | 1578 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | Pfam | Region in Clathrin and VPS | 700 | 839 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | Pfam | Region in Clathrin and VPS | 556 | 689 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | Pfam | Region in Clathrin and VPS | 992 | 1129 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | Pfam | Region in Clathrin and VPS | 849 | 982 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | PANTHER | CLATHRIN HEAVY CHAIN RELATED | 1 | 1497 | - | - | |
| Lele03g1223 | 1700 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 550 | 696 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | SUPERFAMILY | ARM repeat | 344 | 499 | IPR016024 | - | |
| Lele03g1223 | 1700 | Pfam | Clathrin-H-link | 368 | 433 | - | - | |
| Lele03g1223 | 1700 | FunFam | Clathrin heavy chain | 1 | 376 | - | - | |
| Lele03g1223 | 1700 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1287 | 1433 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 846 | 985 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | Gene3D | Tetratricopeptide repeat domain | 1055 | 1195 | IPR011990 | GO:0005515 | |
| Lele03g1223 | 1700 | Gene3D | Tetratricopeptide repeat domain | 902 | 1054 | IPR011990 | GO:0005515 | |
| Lele03g1223 | 1700 | Gene3D | Tetratricopeptide repeat domain | 1196 | 1535 | IPR011990 | GO:0005515 | |
| Lele03g1223 | 1700 | Coils | Coil | 1476 | 1496 | - | - | |
| Lele03g1223 | 1700 | Gene3D | - | 1541 | 1637 | - | - | |
| Lele03g1223 | 1700 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 699 | 841 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | SUPERFAMILY | ARM repeat | 900 | 1065 | IPR016024 | - | |
| Lele03g1223 | 1700 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1436 | 1579 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 992 | 1137 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | PIRSF | CHC | 2 | 1687 | IPR016341 | GO:0016192|GO:0032051|GO:0071439 | |
| Lele03g1223 | 1700 | SUPERFAMILY | ARM repeat | 1051 | 1194 | IPR016024 | - | |
| Lele03g1223 | 1700 | ProSiteProfiles | Clathrin heavy-chain (CHCR) repeat profile. | 1141 | 1282 | IPR000547 | GO:0006886|GO:0016192 | |
| Lele03g1223 | 1700 | SUPERFAMILY | ARM repeat | 456 | 792 | IPR016024 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele03g1223 | Lele-ChrLele03 | 7214443 | 7225577 | Dispersed/Wgd |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lele03g1223 | 03 | 7214443 | 7225577 | Lele03g1223 | 03 | 7214443 | 7225577 | ECH | |
| Lele01g1209 | 01 | 7271241 | 7272734 | Lele03g1223 | 03 | 7214443 | 7225577 | hybridization | |
| Lele02g1479 | 02 | 18981753 | 18996525 | Lele03g1223 | 03 | 7214443 | 7225577 | hybridization |