Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1213 ATGTCGTCGCTGAGAAGTATCTGCAGAGAGAAAATGGGACTCAGAAACACAAGGAGGGTTGCACCAGAGAGAACAGTGATGAAGGAAATAGTGAAGAGATGGTCAAGTAAGAAGATGAAGAAGGAAGAAGAAGACGAAGAAGAGGAAGAGGAGGGTTTGCCAATGGACGTTCCAAAGGGTCATTTTGTGGTTTATGTGGGAGAGAAGAGAATCAGATACATTGTGCCTATTTGGTTTCTGAGACGCCCTGAATTTCAGAGGTTGCTTCATGAAGCAGCTCTAGAGTTTGGGTTTTGCCATCAAAGTGGTCTCACGATTCCTTGCCAACAACATGTTTTTGAGTCTCTTATAACTAAATTGCTCCGACCGTGA 372 0.4382 MSSLRSICREKMGLRNTRRVAPERTVMKEIVKRWSSKKMKKEEEDEEEEEEGLPMDVPKGHFVVYVGEKRIRYIVPIWFLRRPEFQRLLHEAALEFGFCHQSGLTIPCQQHVFESLITKLLRP 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1213 123 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 38 116 IPR003676 GO:0009733
Lele03g1213 123 Coils Coil 31 51 - -
Lele03g1213 123 Pfam Auxin responsive protein 38 118 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1213 Lele-ChrLele03 7140529 7140900 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1213 27 122 Calmodulin-binding Proteins AT4G34750 36.458 3.80e-16 68.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1213 03 7140529 7140900 Lele03g1213 03 7140529 7140900 ECH
Lele01g1199 01 7174112 7174471 Lele03g1213 03 7140529 7140900 hybridization
Lele02g1468 02 18893712 18894059 Lele03g1213 03 7140529 7140900 hybridization