Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1206 ATGTCGACTTCCGGTCAGGATCAAGCCGCTCGTCATCACCTCTCTCAATTCCAATTCCATCTTCTCCACTCCCATTCTCAATTTCAGTACGATCGCACTTTCACTTCTCAGCCTTTCTCTTCCTCTTCTTCCCACCAATTCGCTTCTGAAGATGCCCACTCTGCTTTTGCAAAGCTTGCCACTGTGACTTCCACTTCTACTATATTTATGATGAAGTCAACTTTCGGTATCAGATGGTGTTCGAATGTCAATAATAAATATGGAGAAAGATTGAGTCAAAGATATGAAATTGATAATTCCGGGCCTCAGATGAGTAATCCTGAAGTAGCTCCAAATCTGAGCAAAATAGTTAATCTTTCTCCACTCAAAACTGAGCCTTCCTTAAGTGGAAAACACCATGGTAAATCAAAAGTTTCAAGAAATGCAAAATCAGGGAATCAAAGATCAAATTCTGAGTCTTCTAATCCAACTCCAGTTAATTGCCGTTATGATAGTTCCTTGGGACTGTTAACCAAGAAATTTGTCAGTTTAATTCAGGAGGCTAAGGACGGTACCCTAGATTTAAATAAAACCGCCGAGATATTGGAGGTTCAGAAAAGGAGAATTTATGATATTACAAATGTTCTTGAAGGAATAGGATTGATAGAAAAAACATCGAAGAACCATATACGGTGGAAGGGATATGATGGACTAGGGCCAGGCGAACTGGATGATCAAGTAACTAGATTAAAGTCTGAAGTTGAAAATCTATATTCTGAGGAATGCCAACTTGATGATATTATAAGGAAAAAGCAAGAGCTCCTAAGAACTTTGGAGGAAAAAGAAAACCATCAAAAGTACCTTTTTTTGACTGAGGAAGATATTCTTAGCCTTCCATGCTTCCAGGATCAAACACTCATTGCCATCAAGGCGCCCCAAGCTAGTTTCGTTGAAATTCCTGATCCTGATGAGGATAATGATTTCCGGCAAAGGCAGTATAAAATGATCGTTAGGAGCACCACTGGACCAATAGATTTGTACCTCTTGAGCAAACACAACTCCAATTATGAGGACGTTAGCTTCAACCAGGCTACGTTAGTAGATCCTTCACAGAAAGGTGACCAGTGTGGATTGAAGAGTGCAGGATTACGTTTAGAAAGCCAAGATGCACAGAAAAATCCTTCTCAAAGTTTTAGCTCGCTGGACTCGGAGCCACCTGGCATTCAGAAAATTACACCAATGGATTTTGATATCGAAGATGACTACTGGTTCCAATCAGATCATGGAGTCACCCTGACGGATTTGTGGGCGAATGAGGAATTAGTTCACATAGATGAGGTCCTTCAAGACGATTACTCGAATTTGGGTGGTGCACTCACTCAAACACCAGCTTCCCGGACAGATGTGGTCAATAGATTGCAGGATTGTGGAGCTTCGGTACCTGAATCAGATTGCTAA 1437 0.4099 MSTSGQDQAARHHLSQFQFHLLHSHSQFQYDRTFTSQPFSSSSSHQFASEDAHSAFAKLATVTSTSTIFMMKSTFGIRWCSNVNNKYGERLSQRYEIDNSGPQMSNPEVAPNLSKIVNLSPLKTEPSLSGKHHGKSKVSRNAKSGNQRSNSESSNPTPVNCRYDSSLGLLTKKFVSLIQEAKDGTLDLNKTAEILEVQKRRIYDITNVLEGIGLIEKTSKNHIRWKGYDGLGPGELDDQVTRLKSEVENLYSEECQLDDIIRKKQELLRTLEEKENHQKYLFLTEEDILSLPCFQDQTLIAIKAPQASFVEIPDPDEDNDFRQRQYKMIVRSTTGPIDLYLLSKHNSNYEDVSFNQATLVDPSQKGDQCGLKSAGLRLESQDAQKNPSQSFSSLDSEPPGIQKITPMDFDIEDDYWFQSDHGVTLTDLWANEELVHIDEVLQDDYSNLGGALTQTPASRTDVVNRLQDCGASVPESDC 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1206 478 PANTHER TRANSCRIPTION FACTOR E2F 124 436 IPR015633 GO:0000978|GO:0006357
Lele03g1206 478 SUPERFAMILY "Winged helix" DNA-binding domain 162 225 IPR036390 -
Lele03g1206 478 CDD E2F_DD 238 345 IPR032198 GO:0046983
Lele03g1206 478 Gene3D - 234 345 - -
Lele03g1206 478 Pfam E2F transcription factor CC-MB domain 243 342 IPR032198 GO:0046983
Lele03g1206 478 MobiDBLite consensus disorder prediction 379 401 - -
Lele03g1206 478 SUPERFAMILY E2F-DP heterodimerization region 238 344 IPR037241 -
Lele03g1206 478 SMART E2F_TDP_2 162 227 IPR003316 GO:0005667|GO:0006355
Lele03g1206 478 MobiDBLite consensus disorder prediction 124 160 - -
Lele03g1206 478 Gene3D - 157 229 IPR036388 -
Lele03g1206 478 Coils Coil 257 277 - -
Lele03g1206 478 MobiDBLite consensus disorder prediction 379 399 - -
Lele03g1206 478 Pfam E2F/DP family winged-helix DNA-binding domain 164 227 IPR003316 GO:0005667|GO:0006355
Lele03g1206 478 FunFam E2F transcription factor 1 157 229 - -
Lele03g1206 478 MobiDBLite consensus disorder prediction 140 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1206 Lele-ChrLele03 7082601 7088127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1206 2 431 E2F-DP Transcription Factor Family AT1G47870 44.820 1.30e-102 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lele03g1206 E2F_CC-MB 2.6e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1206 03 7082601 7088127 Lele03g1206 03 7082601 7088127 ECH
Lele01g1191 01 7109974 7116463 Lele03g1206 03 7082601 7088127 hybridization
Lele02g1460 02 18820128 18824907 Lele03g1206 03 7082601 7088127 hybridization