Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1199 ATGAAACGCATATTCTGCGATCTGATTACAAGAACCTTCACAGTTACAATGAACCAGAAGGATATAGTTAGATTCTTGACTACAACCATCGATAGTTTCATTCAAGATCGGTTAATCGACAAAGAACGAAGGATTCAACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGAAAGCATTGATAAAGACAGTGAAGTTCAGTACTCTGATCAAGCAGTATTAGCAAATCTTGATTGGGGTATGGAAGCTCTTGAAGAAGCTATCAATACTTATAATATGGAAACTAAGATTGCTCGTTTAGATTATGCTGAGAAGATGTTACAAGTTTGTGCCATGTTGAATCCTAATCGAAAAACTGCTGGCGTGCCAAATTTTTACCTCTCTGCTTGGGCTCACCTTAATCTCTCCTACCTATGGAAGTGTCGGAACAATGTTCAAAATTCAATTTTTCATGCTCTTGAGATGTTCATCGTTGACCCTTTCTTCTCAAGGATTGATTTTGCTCCAGAGCTTTGGAAAGATCTGTTTCTTCCACACATGAGTTCCATTGTAGGTTGGTATTCAGAGGAGAGGCACAGGCTCATGATGGAAGTTATACCTGATTCTTCAGATTTGTCATTTACAGCTGATTTTGATCAGTTCTTTAATGAGTCTTTGATTTATACTATGAGGCCACATCAAGTAGAGAAACTTCAAAAGCTGGAGAAGCTTTATGGAGAATCATTGGACAAAAACACAAGACTTTATGCTAAGTATTATAAGGATTGTATCAGCCCTGATTCAGCAACCTCCAGCAAGAAGGCTCCAATGTTACCGATTGCCGAGCCGCCGGTGACACCTCTGCATGAGTTGAGTTGCTCTATTCCTGATTATGTAAAATTTGGTCCTATATTGCCTAAGAGTGCTGGGTTTTCTCTGGTTCTGAAATCTGAAGATGGTGCAAATGAAACTATAAGAGGGAATGTGACTTCCAGTCATTCACAAAAGGCAGAGAAGTCATCAACTACATGGGGTGCTAAGGAGAGTACCGTTGGAGAGTATGAAGATTCAGATTATGAACTCAATGATTCATACATTGATCCAGATAGGAAAACTCAAACTATTGTGTCTCCTAGAATTAACACTATCAAGGGTGAGGATATTGAGCCAAAAGTACATCATCAATCGAACCAGAGGAATCAAATATATTCTCCTCCAGTTTTCTCTCCTTTGGATTCTCCAAGAGCTCCTCCTAAAAACTCATCTTTAATTCATGAGATACACACTAAAGGAGAACCCAAATCTTTGCGCTTATTGTCTCGGCGTTTTTCAGACTTAAGTATTTCCAACTCTTCACCAATATCTCCACACATGAGTACTGATCACAGCATTAGCTCAGAAGATTCTGATAACGAAATAATGGGGGTGAAGAACAGCCAAAGGAAAAACCATTACTCAGAAAAGATTATTAATCATGAGAAAGAGAATAACCTCTCATTCAATGACAATTCACTTTATGGGAGCCAAGAGGGAAATAGCAGCAGTAGTTTATCACTGAAATCAGAGAAGATTGGAGTTCAATCAAGACCACCCAAAGATTTTGTTTGCCCTATCACAGGCCAGATATTTTGTGATCCTGTCACACTTGAAACTGGTCAGACATATGAAAGAAAAGCAATTCAAGAATGGCTCAAAACAGGAAACACAACATGTCCCATTACAAGACAATCTCTCTCTGCTAGCATACTACCTAAAACAAACTATGTCTTGAAGAGATTGATAACATCATGGAAAGAACAACATCCAGAACTAGCTCAGGAGTTCTGGAATTCGGACTGGTTACGGGCTTCTCTAAATTCTCCCTCTGTCAAAGATATCCCTGTGGTCTCTAACATGCACAAACCAGTTGACTCACCAGCTCATAAGAATGCAAATGATTATATTAGACAAAGGAGCAAAAAATTTATGCAGGTTTCTGTTGCATCATCACCAACTAGTGTAATATCTCAAGCTGCAGTTGAAACAATTATAAATTGTTTGAAGCCTTACATTTCAAGTCTCTGCACATCAGAAGACTTGCAAGAATGTGAAGATTCTGTATTGGCAATAGCTAGATTATGGAAGGACTCAAAGAATGATCCTCATATTCATTCTAATTTATCAAATCCAACTGTTATAAATGGTTTAGTTGAAATACTTTCTGCTTCTCTAAATAGAGAAACTCTGAGAACATCAATTTATATCCTGTCTGAGCTAATTTTTGCAGATGAAAGTGTTGGAGAAATTCTCTCCAATGTTGACTCTGATTTCGATTGCTTGGCTACTCTGCTTAAGAATGGTTTAATTGAGGCTGCTGTTCTAATTTACCAACTAAGGCCGGTTTACGATCAACTTTCTTCTCATGAACTGATACCCTCAATTGTTCATCTGATCCAGAACAAAAATGAGGAGTTCGACGATCTTCGTTTACTTATCGATCCCAGAGATGCGGCTGTGGCGATTCTTGAGCAGATTTTATTAGGAGGAAATGAATACAGCAGGTCCCTCAATGCTTTGAGTGTTATTTCAGCAAATGGGATTCCGATATTGGTTAAGTATATGGAAAGAATGGAAGGAAGGAGATCTGTTGTTTCCATACTTCTATGCTGTATGCAAGCTGAAAAAAGTTGCAGGGGCTTAATTGCAAACAGAATTGAAATATCTCCTGTTCTTGAATTGTTTCATTCTGGAAATGACAGTGTCAGAGGAATATGTGTGGAGTTTCTCTCACAGCTTGTCCAATTGCATAAGAGGACAATGTGCAACAAGATATTGCAGATTATCAAGGATGAGGGAGCATTTAGTACCATGCATACATTTCTTGTGTATCTTCAGATGGCTCCTATGGAGCATCAACTTGCAGTTGCTAGTCTTTTGCTTCAGCTTGATCTCCTGGTTGAGCCACGAAAGATGAGCATTTTCAGGGAAGAAGCTGTAGAGACACTGATAGAATCACTTTGGCGAAAGGACTTCTCAAATACTCAGACAAGGGCTTTAGATGCTTTACTGCTTCTTATAGGCCAGCTCACTTCTGCAGGAAAGTCATACACTGAAGCCTGGCTGCTTAAGACCGCAGGATTTGACCAACCTTACAATGCTCTAATGAAAGTTGAGCAGTTGGAAAAATATGACAACGATATGGTGGAAACAATGGAGGATGAAGAAAATGCTATGAGCTCTTGGCAGAAAAGGGTAGCTTTTGTTCTTTGCAACCATGAAAAGGGTTCCATATTTAAAGCTTTAGAAGAATGCCTCAAGAGTACTTCCTTAGAGACAGCAAAATCATGCCTTGTGGTTGCCACGTGGCTCACACACATGCTCTCAACCATTCCTGATACTGGTATAAAGGATGTTGCTCGAATATCCTTGCTTGAGGAACTTATAAACGTCCTTCAATCATCGAAGAACCTCGAGGAAATGATCCTAGCTACCCTTGCTTTGAAGAACTTTCTTAGTGATCCAATTGCTCTTGAAGCACTAGGATCTTATGCCAAAAGCATCTATAAAGCATTGAGAAAGTTGAAGAAATATTCTGTGGCGGCAGTTGATATTATGAAAGTCTTACTGAACTTAAAATCCGTTGATGTGACAGCATTGTGGAGTTGTAAGGAAGTCGTTGAGCTAGATTTGAGCTCAAATGGAGAGGTACTTTCTTTGCTCTATGTGAATGGTCGGGTCTTGAGTGGACACTCTGATGGAACCATGAAGGTGTGGGATTCTAGGAAGAGAGTATTAAGATTGATTCAAGAAACTCATGAGCACACTAAAGCTGTAACATGTCTCTACTCTTCAGGCGATAAACTGTACAGTGGTTCCTTAGACAAAACCATCCGGGTATGGACGATGAAATATGATGAAATTCAATGTATTCAAGTTCATGATATCAAAGAGGCAGTGTATGAGTTGATAGCAAATGATAAATTGGCATGCTACGTAACTCAAGGAACTGGAGCTAAGGTGTATAATTGGTCGGATGCTCCAAAGCTCATTAATTTCAACAAACATGTGAAATGCCTTGCAATGTCTGGGAACAAACTGTATTGTGGTTGCTCTGGTTACAGTGTTCAGGAGGTAGACTTGTTGAATCATACATCAAATACACTTTTATCAGGGACAAGAAAATTGCTGGGAAAACAAACCATTTACTCCCTTCTGATTTATGATGATTTCCTCATTGCTGGTGGTTCTTTCGCTGATTCGACTGCAGGAAAGATATTGTCGCTGTCGTCGAAAGCAGCGGTGGGGTCACTCTCCACAGGACTAGAAATCCACTGTATGGCCATGAACAGTGACTTTGTGTTTACAGGCACTAAATGTGGCACTATTGAGGTATGGCTAAAGTATAAGCTAAGCAGGGTTGCTTCCATAAAAATGGCTGGTGGTCACACAAAAATCACGTCATTGGCATCAGATTCAGATGGTGTTATGCTTTTTGTTGGTTCCTCTGACGGCAAGATCCAGGCTTGGGCTTTGGATTAA 4503 0.3962 MKRIFCDLITRTFTVTMNQKDIVRFLTTTIDSFIQDRLIDKERRIQHKEQCAERLAAEDESIDKDSEVQYSDQAVLANLDWGMEALEEAINTYNMETKIARLDYAEKMLQVCAMLNPNRKTAGVPNFYLSAWAHLNLSYLWKCRNNVQNSIFHALEMFIVDPFFSRIDFAPELWKDLFLPHMSSIVGWYSEERHRLMMEVIPDSSDLSFTADFDQFFNESLIYTMRPHQVEKLQKLEKLYGESLDKNTRLYAKYYKDCISPDSATSSKKAPMLPIAEPPVTPLHELSCSIPDYVKFGPILPKSAGFSLVLKSEDGANETIRGNVTSSHSQKAEKSSTTWGAKESTVGEYEDSDYELNDSYIDPDRKTQTIVSPRINTIKGEDIEPKVHHQSNQRNQIYSPPVFSPLDSPRAPPKNSSLIHEIHTKGEPKSLRLLSRRFSDLSISNSSPISPHMSTDHSISSEDSDNEIMGVKNSQRKNHYSEKIINHEKENNLSFNDNSLYGSQEGNSSSSLSLKSEKIGVQSRPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLKTGNTTCPITRQSLSASILPKTNYVLKRLITSWKEQHPELAQEFWNSDWLRASLNSPSVKDIPVVSNMHKPVDSPAHKNANDYIRQRSKKFMQVSVASSPTSVISQAAVETIINCLKPYISSLCTSEDLQECEDSVLAIARLWKDSKNDPHIHSNLSNPTVINGLVEILSASLNRETLRTSIYILSELIFADESVGEILSNVDSDFDCLATLLKNGLIEAAVLIYQLRPVYDQLSSHELIPSIVHLIQNKNEEFDDLRLLIDPRDAAVAILEQILLGGNEYSRSLNALSVISANGIPILVKYMERMEGRRSVVSILLCCMQAEKSCRGLIANRIEISPVLELFHSGNDSVRGICVEFLSQLVQLHKRTMCNKILQIIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIFREEAVETLIESLWRKDFSNTQTRALDALLLLIGQLTSAGKSYTEAWLLKTAGFDQPYNALMKVEQLEKYDNDMVETMEDEENAMSSWQKRVAFVLCNHEKGSIFKALEECLKSTSLETAKSCLVVATWLTHMLSTIPDTGIKDVARISLLEELINVLQSSKNLEEMILATLALKNFLSDPIALEALGSYAKSIYKALRKLKKYSVAAVDIMKVLLNLKSVDVTALWSCKEVVELDLSSNGEVLSLLYVNGRVLSGHSDGTMKVWDSRKRVLRLIQETHEHTKAVTCLYSSGDKLYSGSLDKTIRVWTMKYDEIQCIQVHDIKEAVYELIANDKLACYVTQGTGAKVYNWSDAPKLINFNKHVKCLAMSGNKLYCGCSGYSVQEVDLLNHTSNTLLSGTRKLLGKQTIYSLLIYDDFLIAGGSFADSTAGKILSLSSKAAVGSLSTGLEIHCMAMNSDFVFTGTKCGTIEVWLKYKLSRVASIKMAGGHTKITSLASDSDGVMLFVGSSDGKIQAWALD 1500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1199 1500 Pfam U-box domain 526 596 IPR003613 GO:0004842|GO:0016567
Lele03g1199 1500 SUPERFAMILY RING/U-box 522 597 - -
Lele03g1199 1500 MobiDBLite consensus disorder prediction 380 417 - -
Lele03g1199 1500 MobiDBLite consensus disorder prediction 442 465 - -
Lele03g1199 1500 MobiDBLite consensus disorder prediction 319 343 - -
Lele03g1199 1500 MobiDBLite consensus disorder prediction 495 517 - -
Lele03g1199 1500 CDD RING-Ubox_PUB 529 571 IPR045210 -
Lele03g1199 1500 SMART WD40_4 1418 1454 IPR001680 GO:0005515
Lele03g1199 1500 SMART WD40_4 1252 1289 IPR001680 GO:0005515
Lele03g1199 1500 SMART WD40_4 1457 1498 IPR001680 GO:0005515
Lele03g1199 1500 SMART WD40_4 1209 1247 IPR001680 GO:0005515
Lele03g1199 1500 SUPERFAMILY ARM repeat 640 1165 IPR016024 -
Lele03g1199 1500 Pfam WD domain, G-beta repeat 1468 1497 IPR001680 GO:0005515
Lele03g1199 1500 Pfam WD domain, G-beta repeat 1259 1288 IPR001680 GO:0005515
Lele03g1199 1500 Gene3D - 675 953 IPR011989 -
Lele03g1199 1500 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 13 1499 - -
Lele03g1199 1500 MobiDBLite consensus disorder prediction 442 457 - -
Lele03g1199 1500 Gene3D - 1196 1500 IPR015943 GO:0005515
Lele03g1199 1500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1466 1500 - -
Lele03g1199 1500 ProSiteProfiles Trp-Asp (WD) repeats profile. 1466 1500 IPR001680 GO:0005515
Lele03g1199 1500 MobiDBLite consensus disorder prediction 319 344 - -
Lele03g1199 1500 ProSiteProfiles Trp-Asp (WD) repeats profile. 1259 1291 IPR001680 GO:0005515
Lele03g1199 1500 ProSiteProfiles U-box domain profile. 524 599 IPR003613 GO:0004842|GO:0016567
Lele03g1199 1500 SUPERFAMILY WD40 repeat-like 1231 1499 IPR036322 GO:0005515
Lele03g1199 1500 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 509 605 IPR013083 -
Lele03g1199 1500 SMART Ubox_2 528 592 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1199 Lele-ChrLele03 7031678 7039326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1199 507 920 U-box Gene Family AT1G23030 24.883 8.51e-20 93.6