Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1190 ATGCAACACGGGGACTATAGCTCATCTTCTTATTATCAATTCCCTCCGATGCAGAACCCAATTCCCAATCCTAATCCTAACCCTAACCCTATCCCTCCCGATTCAGTCCCAAACCAGTACGCCTCCGCTCCTCCTTTCACCTCTGATTATTCGCCTTACGCTTCTACTTATCCTCCATACCCTCAAAATCCCGATCCTATGCCAGTCCCTCCCACTGCCCCTTCATACCCTCCAACCTCCAACCCCAATTTGAACTCTTTCAGTTCTCCTCCCCAACCTTCCTCTCTTCCTCCGTTTGAGTCCCATGTCCCGTATCAACAACCTCCACAACAATGCCAATATCCCCCGTATGATCAACATCAGACGGCTCCAAGTTATGCTCCTTCTTCCTCCGCAATTCCTCCAAACCCCACTCCCAATTCTGTAACATCGTCCTTCTATCCGGCTTCTTACATTCATCCTGGATCGTCGATTCCCCCTACATACGAAAGTCCGTACGAGAATTCCGTGAAATTCGATTATGGTGGTGCTTATGTCGATGACAACTATGGAAGTTTCAATAAGAGTCGGCCTGATATGGGGTCGGATTTGTATGGAAAGCGACCGGATACGAGGCATGATGATATTTATGGAGATGGCGTGTATGCCTATAGAGGGGGCGAGACGGAACCATATGGAGCACGGGGTACGGCTCCTAAGTCTTCAGCTTGGTCCGGTTTTGATGATTATGGAAGGTCAATTAGTTTTCCCTCTGCGAAGGAACCCTCTTTTTCTAACAAGGTTGTGAAAGCTGTGCCGAAGGCTGATGCCCAAGAGGATGTTAAAAGCGGAGTGCAAAAATTTCGTGTCAAGCTATTAGCAGAAAGTGTTGGTCAGAGCACTACGGATGTTCTCTGTCAGATTGGTTTGGATGGAATTCGTATGCTGGATCCAAGTACCAGCCGGCTGTTGAGAGTTTATCATCTTGAGAACATCACGAGATGTGAAAAATTCGATTCCAATACCCTTGCGTTTTGGTCCAAGAGTCCAGTTGACATTGAGCCAAGACGAATTAGATTGCAATCCAATAGTTACACCACTAACACTCTCTTGGATACAGTTACTGCCGCAACCATACAGTTCAAGGAAATGGGTGAAAGTAGGAGGCCTGTTGAATCATTGAAAGCAAATGAGCAACCTACAGAAAAGAAGAAAGGCCTTGTTGATTGGATGAATCTGATCAAACCTGCCAATGAGGAGAAAGATCATTGGGTCCCAGATGAAGCAGTTTCAAAATGCACAGCATGTGGAACTGATTTTGGGGCTTTTGTTCGTAAGCATCACTGTAGGAATTGTGGGGATATTTTCTGTGACAAATGTACGCATGGTAGAATTGCTCTAACTGCTGATGAGAATGCTCAGCCAGTACGAGTTTGTGACCGATGCATGGCAGTAGTGACACAGAGGCTCAGTAATGCTAAAGAGGCTCCAAACAAGCCTGTATCGCAAGGTCATGAAGATCTTGCGAGGAAACTTAAGGAGGAGCTGGAGAGGAATCGGAGGACATCAGGTTCCAAGTCTGATGGATCTGGAAGACGGATGAAGGAAGTTGAATGCCCCACTTGCACAGTCCATCTGCAGGTTCAAGTACCCAGCTCGGGTTCAGAGACCATTGAGTGTGGGGTTTGCCAGCACCCATTTCTTGTGAGTGCTCATTGA 1698 0.4688 MQHGDYSSSSYYQFPPMQNPIPNPNPNPNPIPPDSVPNQYASAPPFTSDYSPYASTYPPYPQNPDPMPVPPTAPSYPPTSNPNLNSFSSPPQPSSLPPFESHVPYQQPPQQCQYPPYDQHQTAPSYAPSSSAIPPNPTPNSVTSSFYPASYIHPGSSIPPTYESPYENSVKFDYGGAYVDDNYGSFNKSRPDMGSDLYGKRPDTRHDDIYGDGVYAYRGGETEPYGARGTAPKSSAWSGFDDYGRSISFPSAKEPSFSNKVVKAVPKADAQEDVKSGVQKFRVKLLAESVGQSTTDVLCQIGLDGIRMLDPSTSRLLRVYHLENITRCEKFDSNTLAFWSKSPVDIEPRRIRLQSNSYTTNTLLDTVTAATIQFKEMGESRRPVESLKANEQPTEKKKGLVDWMNLIKPANEEKDHWVPDEAVSKCTACGTDFGAFVRKHHCRNCGDIFCDKCTHGRIALTADENAQPVRVCDRCMAVVTQRLSNAKEAPNKPVSQGHEDLARKLKEELERNRRTSGSKSDGSGRRMKEVECPTCTVHLQVQVPSSGSETIECGVCQHPFLVSAH 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1190 565 MobiDBLite consensus disorder prediction 105 129 - -
Lele03g1190 565 PANTHER PROTEIN FREE1 1 565 IPR045893 GO:0036258|GO:0043130
Lele03g1190 565 SMART fyve_4 412 481 IPR000306 GO:0046872
Lele03g1190 565 MobiDBLite consensus disorder prediction 507 526 - -
Lele03g1190 565 MobiDBLite consensus disorder prediction 17 39 - -
Lele03g1190 565 MobiDBLite consensus disorder prediction 136 150 - -
Lele03g1190 565 MobiDBLite consensus disorder prediction 57 78 - -
Lele03g1190 565 MobiDBLite consensus disorder prediction 1 150 - -
Lele03g1190 565 PRINTS Proline rich extensin signature 93 109 - -
Lele03g1190 565 PRINTS Proline rich extensin signature 14 26 - -
Lele03g1190 565 PRINTS Proline rich extensin signature 120 137 - -
Lele03g1190 565 PRINTS Proline rich extensin signature 30 46 - -
Lele03g1190 565 PRINTS Proline rich extensin signature 52 64 - -
Lele03g1190 565 PRINTS Proline rich extensin signature 66 87 - -
Lele03g1190 565 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 420 480 IPR017455 -
Lele03g1190 565 MobiDBLite consensus disorder prediction 40 56 - -
Lele03g1190 565 FunFam Zinc finger, FYVE-type, endofin 407 485 - -
Lele03g1190 565 Pfam FYVE zinc finger 416 480 IPR000306 GO:0046872
Lele03g1190 565 Coils Coil 495 515 - -
Lele03g1190 565 CDD PTB 255 328 - -
Lele03g1190 565 SUPERFAMILY FYVE/PHD zinc finger 415 485 IPR011011 -
Lele03g1190 565 MobiDBLite consensus disorder prediction 1 16 - -
Lele03g1190 565 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 484 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1190 Lele-ChrLele03 6973599 6978072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1190 408 476 EF-hand Containing Proteins AT3G14270 37.333 4.06e-12 67.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1190 03 6973599 6978072 Lele25g0050 25 306720 309991 CCT
Lele03g1190 03 6973599 6978072 Lele26g0061 26 335090 338293 CCT
Lele03g1190 03 6973599 6978072 Lele27g2036 27 24403034 24406313 CCT
Lele03g1190 03 6973599 6978072 Lele28g0060 28 332220 336525 CCT
Lele03g1190 03 6973599 6978072 Lele03g1190 03 6973599 6978072 ECH
Lele01g1175 01 6999030 7003466 Lele03g1190 03 6973599 6978072 hybridization
Lele02g1442 02 18691502 18695355 Lele03g1190 03 6973599 6978072 hybridization