Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1179 ATGACAATACATGTAGATACAAGCTCAACTTTCTTCCTCATTAGGGCCATTATTAAGCAGAGCAAGAAAATGAAGAAAGCAATGGTTCTTTTGGGTAGCCTTGTGGGGTTATGGTATTTCACAATCACTGCTTCTGCCTTCTCAGCTTCTGGATGGACCCAAGGACATGCCACCTTCTATGGAGGTAGCGATGCCTCAGGAACAATGGGAGGAGCTTGTGGGTATGGGAATCTGTATTCAACAGGGTATGGGACAAGAACTGCAGCTTTAAGCACAGCTTTATTCAACGATGGAGCTTCATGTGGGCAATGCTACAAAATCATATGTGATTATAAGACAGACCCAAGATGGTGCTTGAGAGGAAGATCTATAACTATAACTGCCACTAACTTCTGCCCTCCTAATTTTGCGCTCCCAAACAACAATGGAGGTTGGTGCAACCCACCTCTTAAGCACTTCGACATGGCTCAACCCGCTTGGGAAAAGATCGGTATTTACAGAGGAGGCATCATCCCCGTCTTGTTCCAAAGGGTTCCATGTAAGAAGCACGGAGGAGTTAGGTTCACTGTGAATGGAAGAGATTACTTTGAGCTGGTAATGATCAGCAATGTGGCTGGTGCTGGATCCATTTCTTCTGTTTCCATCAAAGGCTCAAAAACTGGGTGGATGTCTATGTCCAGAAACTGGGGAGCTAATTGGCAATCGAATGCGTATCTGAATGGCCAATCTTTGTCATTCAAGATCACAACCGATGATGGAGAAACCAGAGTGTTCCCAGATGTGGTTCCATCTTCTTGGAGCTTTGGCCAGACATTCTCAAGCAAAGTCCAGTTCTAA 837 0.4504 MTIHVDTSSTFFLIRAIIKQSKKMKKAMVLLGSLVGLWYFTITASAFSASGWTQGHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCGQCYKIICDYKTDPRWCLRGRSITITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWEKIGIYRGGIIPVLFQRVPCKKHGGVRFTVNGRDYFELVMISNVAGAGSISSVSIKGSKTGWMSMSRNWGANWQSNAYLNGQSLSFKITTDDGETRVFPDVVPSSWSFGQTFSSKVQF 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1179 278 PRINTS Expansin signature 143 160 IPR002963 GO:0009664
Lele03g1179 278 PRINTS Expansin signature 160 173 IPR002963 GO:0009664
Lele03g1179 278 PRINTS Expansin signature 184 196 IPR002963 GO:0009664
Lele03g1179 278 PRINTS Expansin signature 111 122 IPR002963 GO:0009664
Lele03g1179 278 PRINTS Expansin signature 196 217 IPR002963 GO:0009664
Lele03g1179 278 PRINTS Expansin signature 231 252 IPR002963 GO:0009664
Lele03g1179 278 PRINTS Expansin signature 124 134 IPR002963 GO:0009664
Lele03g1179 278 PRINTS Expansin signature 260 276 IPR002963 GO:0009664
Lele03g1179 278 PRINTS Expansin signature 82 96 IPR002963 GO:0009664
Lele03g1179 278 Pfam Lytic transglycolase 87 174 IPR009009 -
Lele03g1179 278 FunFam Expansin 41 181 - -
Lele03g1179 278 SMART dpbb_1 87 175 IPR007112 -
Lele03g1179 278 PRINTS Expansin/Lol pI family signature 91 109 IPR007118 GO:0005576
Lele03g1179 278 PRINTS Expansin/Lol pI family signature 222 236 IPR007118 GO:0005576
Lele03g1179 278 PRINTS Expansin/Lol pI family signature 168 184 IPR007118 GO:0005576
Lele03g1179 278 PRINTS Expansin/Lol pI family signature 51 66 IPR007118 GO:0005576
Lele03g1179 278 PRINTS Expansin/Lol pI family signature 260 274 IPR007118 GO:0005576
Lele03g1179 278 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Lele03g1179 278 PANTHER EXPANSIN-A15 34 275 IPR002963 GO:0009664
Lele03g1179 278 Gene3D - 185 278 IPR036749 -
Lele03g1179 278 Gene3D - 40 181 IPR036908 -
Lele03g1179 278 SUPERFAMILY PHL pollen allergen 182 274 IPR036749 -
Lele03g1179 278 SUPERFAMILY Barwin-like endoglucanases 44 203 IPR036908 -
Lele03g1179 278 FunFam Expansin 185 278 - -
Lele03g1179 278 Pfam Expansin C-terminal domain 186 263 IPR007117 -
Lele03g1179 278 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 195 274 IPR007117 -
Lele03g1179 278 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 70 185 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1179 Lele-ChrLele03 6908657 6909795 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1179 24 278 Expansin Gene Family AT4G01630 64.844 8.62e-122 346