Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1178 ATGATAAATGTATCAGGAAGCTTTTTTGAGGATATTGCTGATGAGGATGAAGATGAAGATCTCTTGTTCTTTCGGGAGCCTCCACCCACGGGAACATTTCTGAGGGACCCAGCTTTGGTCCAGTACCTTCTACAAGGATATACAAGTGGCGGGGGATTATTTCGTAGATGGTTTTTCAAAATGACTCAAGATGTTGAGATGAAAGATCATACAACTCATTCTCATTCTGTTTCTTCAGCTGTTCCGTCTACTTTGCAGCATTTAAAGGAGATAGCGTCACTTATCGAGACCGGTTCGTACTCTAAGGAAGTTCGTAGAATTGCTCGTGCCGTTCGCCTTACAATTGCGTTGAGGCGCAAATTGAAAGCATCGGTGCTCTTATCCTTTATCGATTATGTTGCTTGTCCGGGTTCTGAACCTCACGCCAGATTGTCTGCCTATCTTCCCGAGGAAGATAGTCATGAGATGGAAGTAGATACTGCAACATCTACTGTTCAATCCTCAGCTAAGCACTTTTTGCCTGAGACGGAGATGTACTGTTACTTGCTCATACTGCTTTTTCTGATTGATCAGAAGAAATATAAGGAGGCCAAATCTTGCTCCTCAGAAAGCATTGTTCGGGTGAAGACTCTAAACAGGAGAACTATTGATGTTATTGCATCCAGATTGTACTTCTATTATTCATATATTTATGAACTCACGGGAGATCTTGCAGAAATTCGGGGTAACCTTCTTGCTTTGCACCAGATTGCCACCCTTCGTCATGATGAGCTTGGTCAGGAAACACTTCTTAATTTGTTGCTTCGTAACTACCTCCACTACAACCTTTATGATCAGGCAGAGAGGTTGAGATCTAAGGCACCACGATTTGAAGCACATTCAAACCAGCAGTTCTGTCGATATCTCTTCTACCTCGGGAAAATTCGGACAATTCAATTGGAGTACACTGATGCAAAAGAGTCTCTCCTGCAAGCTGCTCGAAAAGCTCCAGTTGCAGCACTTGGTTTTCGAATTCAGTGTAATAAGTGGGCTGTAATAGTGCGTTTGCTCTTGGGAGAAATACCTGAGAGGACCATCTTCATGCAGAAAGAAATGGAGAAAGCTTTGAGGCCTTACTTTGAGCTTACAAATGCTGTTCGAATTGGCGACCTGGAGCTATTTAGGAATGTTGCAGATAAGTTTGCTGCTACTTTCAGTGCTGATGGAACTCATAATTTGATTGTTAGATTGCGTCATAATGTTATCAGGACTGGTTTACGAAACATTAGCATTTCTTATTCTCGTATCTCGCTTGCTGATGTGGCACAAAAGTTAAGGTTAAACTCTGCAAACCCCATTGCAGATGCTGAGTCCATTGTAGCCAAGGCCATCAGAGATGGTGCGATTGATGCTATATTGGAGCATGGTAATGGGTGGATGGTATCTAAGGAAACTGGAGATGTATACTCCACTACTGAGCCTCAATTGGCTTTTAATTCTCGCATTGCCTTCTGTCTTAACATGCACAATGAGGCCATCCGGGCACTGCATTTCCCTCCAAACACACACAATGAGAAGGAAAGTGCCGAGAGGCGGAGAGAAAGGCAGCAGCAGGAGCAAGAACTAGCTAAGCACATTCAAGAGGAGGATGATGATGATTTCTGA 1644 0.4325 MINVSGSFFEDIADEDEDEDLLFFREPPPTGTFLRDPALVQYLLQGYTSGGGLFRRWFFKMTQDVEMKDHTTHSHSVSSAVPSTLQHLKEIASLIETGSYSKEVRRIARAVRLTIALRRKLKASVLLSFIDYVACPGSEPHARLSAYLPEEDSHEMEVDTATSTVQSSAKHFLPETEMYCYLLILLFLIDQKKYKEAKSCSSESIVRVKTLNRRTIDVIASRLYFYYSYIYELTGDLAEIRGNLLALHQIATLRHDELGQETLLNLLLRNYLHYNLYDQAERLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAALGFRIQCNKWAVIVRLLLGEIPERTIFMQKEMEKALRPYFELTNAVRIGDLELFRNVADKFAATFSADGTHNLIVRLRHNVIRTGLRNISISYSRISLADVAQKLRLNSANPIADAESIVAKAIRDGAIDAILEHGNGWMVSKETGDVYSTTEPQLAFNSRIAFCLNMHNEAIRALHFPPNTHNEKESAERRRERQQQEQELAKHIQEEDDDDF 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1178 547 SUPERFAMILY "Winged helix" DNA-binding domain 406 483 IPR036390 -
Lele03g1178 547 Pfam PCI domain 371 476 IPR000717 -
Lele03g1178 547 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 405 498 - -
Lele03g1178 547 ProSiteProfiles PCI domain profile. 299 480 IPR000717 -
Lele03g1178 547 Gene3D - 303 501 - -
Lele03g1178 547 Coils Coil 519 541 - -
Lele03g1178 547 SMART PINT_4 405 498 IPR000717 -
Lele03g1178 547 MobiDBLite consensus disorder prediction 513 540 - -
Lele03g1178 547 MobiDBLite consensus disorder prediction 512 547 - -
Lele03g1178 547 Pfam Proteasome regulatory subunit C-terminal 480 546 IPR013586 GO:0000502|GO:0030234|GO:0042176
Lele03g1178 547 FunFam 26S proteasome non-ATPase regulatory subunit 3 180 503 - -
Lele03g1178 547 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 69 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1178 Lele-ChrLele03 6899671 6906376 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g0050 25 306720 309991 Lele03g1178 03 6899671 6906376 CCT
Lele26g0061 26 335090 338293 Lele03g1178 03 6899671 6906376 CCT
Lele27g2036 27 24403034 24406313 Lele03g1178 03 6899671 6906376 CCT
Lele28g0060 28 332220 336525 Lele03g1178 03 6899671 6906376 CCT
Lele03g1178 03 6899671 6906376 Lele03g1178 03 6899671 6906376 ECH
Lele01g1164 01 6925685 6933670 Lele03g1178 03 6899671 6906376 hybridization
Lele02g1431 02 18609247 18613340 Lele03g1178 03 6899671 6906376 hybridization