Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1176 ATGATTGATTCCGTTCTTCTGGCACTCTTCTTGCCCTGTCTCGGCATGAGCGCCGTCTTCATGGTCTACATGTGCCTTCTCTGGTACGCCACTACCCACCGTCCTCAAGTCGTGCTGCCGTCGAAGCCCTCGCCGGAGAAGGGCTTGTCGGCGTCCGAGCTGGAGAAGATGCCCAAAGTCACCGGGAAGGAACTGGGGATGGGGAGTGAATGCGCTGTTTGTCTCGACGAGATCGAGAACGAGCAACCTGCTCGACTGGTTCCGGGTTGCAACCACGCGTTCCATGTGGAATGCGCCGATGCCTGGCTTTCCAAGCACCCTTTCTGCCCGGTTTGTAGAGCCAAGCTGGATCCTCAGCTTCTCAGTCCCTGTGAAAATCCCTGCTAA 387 0.5736 MIDSVLLALFLPCLGMSAVFMVYMCLLWYATTHRPQVVLPSKPSPEKGLSASELEKMPKVTGKELGMGSECAVCLDEIENEQPARLVPGCNHAFHVECADAWLSKHPFCPVCRAKLDPQLLSPCENPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1176 128 SMART ring_2 71 112 IPR001841 -
Lele03g1176 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Lele03g1176 128 SUPERFAMILY RING/U-box 70 119 - -
Lele03g1176 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 123 - -
Lele03g1176 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 119 IPR013083 -
Lele03g1176 128 Pfam Ring finger domain 70 113 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1176 Lele-ChrLele03 6887646 6888032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1176 1 128 C3H Transcription Factor Family AT5G42200 54.412 3.02e-44 140
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1176 03 6887646 6888032 Lele03g1176 03 6887646 6888032 ECH
Lele01g1162 01 6915222 6915608 Lele03g1176 03 6887646 6888032 hybridization
Lele02g1429 02 18596364 18596750 Lele03g1176 03 6887646 6888032 hybridization