Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1169 ATGGACTTGCTTTCGGAGCGTTTCAGTCAATTCCTTTCCCTCTTCAACTCCTGCACAACTTCATTTTCCGGTAGACGGAGACGCCATCGTCACAGACAGATCATTACCAGCGATCCTTACGTAAAAGTTTGCCTCGCCAAAGCTACGGTGGCTCGCACTCGTGTCATCTCCAACTCGCAGGATCCTACGTGGAATGAACATTTCAAAATCCCTCTCGCTCATCCCGTCTCGCGGGTCGAGTTCTACATCAAGGACAATGACTTATTCGGCGCTGATCTCATCGGAGTCGCTAGCGTCTCTGCCGAGAGAATCTTATCTGGGGAACTCATCAGTGGTTGGTTCCCCATACTTGGTTCTTATGGTAAACCGCCCAAACCTGATTGTGCCATTCGTCTCGAGATGAAATTCACGAAATGCGAGGATAGTCCACTGTACAGTTACGGAAGTTCTTCCAATCCGGACCGTTTCAAAGGTGGTCCATCTACCATAAGATTTGATGTTAGCATCGGGATTCATGTTCTGCTTGAGTACGATAATGTTGCCAATATCTTCTTATGTGTAAGCTTAGCTTTATCAAACAGCAGGCATGCTTTAGTAGCTTTTTCCATATCTTGTCATGTTTCTCCCAGAAAGTTCCTCCATGTTGTTGGAACCCTCTTTACACATCATCAGAAATGTGTGATTGTGGATACTCAAGCACAAGGCAATAACCGCAAGATAACTGCATTTATTGGTGGTCTAGACCTGTGTGATGGCCGGTATGATACACCTGAGCATCGACTTCTTCGAGATCTTAATACTGTTTATGAGGATGATTATCACAACCCTACATTTCCTATTTTTCGATCAATAGATTCAGGCTCATTGAAAGGATTTCCTAAGGATGTGTATGAAGCTGAAGCTCAGGGACAAACTATGCAAACGATGTATGAACTCATAGCACAAGAGTTGAAATCCATGGGCATTCACGATAGACGCCCAAGAGATTACCTCAATTTCTACTGTCTGGGAAATCGGGAGAACTTGCCGCCTGAAGTTTTAAATTCAATTAATTCAACTCCAAATAACTGTAGTGATACGGTTTCAGCTTCACAAAAGTTCCAACGCTTTATGATTTACGTGCACGCCAAGGGTATGATTGTGGATGACGAGTATGTTTTGCTCGGTTCCGCCAATATCAATCAACGATCCATGGCCGGTTCAAGAGATACAGAGATAGCAATGGGTGCATATCAACCCCATCACACATGGGGAAGGAAAGAGGCACATCCTCACGGTCAGGTTTACGGCTCCTTGGAGAGGGGAACAGTGGAAACTGTAGATTCCATTCTCTGTCAAGGTGACGCTGAAAGTCTCTCCGGGGCCATTGAGAAGATCTTCTTCAGCCATGGAGATCTTGGAATGCAAGCATCTACTCCTCTGGAATCTCGTCCTCGTCGAACACCCCGTTGTTGGGGGAAACCAGCATTGTTCTTGAGCACAACCTTCTCGCCGGAGCTCGCTGAGAAATTGTTGGGAACGAAAGCCAGAGATCCATCATCCCCACCCAGTTACACCGACAGCCATGGAATTGCTAGCTATCACGGCGATTGTGGCGAGGGCCACCCCCACTGCTACAACCTCTTTGAGTGA 1632 0.4632 MDLLSERFSQFLSLFNSCTTSFSGRRRRHRHRQIITSDPYVKVCLAKATVARTRVISNSQDPTWNEHFKIPLAHPVSRVEFYIKDNDLFGADLIGVASVSAERILSGELISGWFPILGSYGKPPKPDCAIRLEMKFTKCEDSPLYSYGSSSNPDRFKGGPSTIRFDVSIGIHVLLEYDNVANIFLCVSLALSNSRHALVAFSISCHVSPRKFLHVVGTLFTHHQKCVIVDTQAQGNNRKITAFIGGLDLCDGRYDTPEHRLLRDLNTVYEDDYHNPTFPIFRSIDSGSLKGFPKDVYEAEAQGQTMQTMYELIAQELKSMGIHDRRPRDYLNFYCLGNRENLPPEVLNSINSTPNNCSDTVSASQKFQRFMIYVHAKGMIVDDEYVLLGSANINQRSMAGSRDTEIAMGAYQPHHTWGRKEAHPHGQVYGSLERGTVETVDSILCQGDAESLSGAIEKIFFSHGDLGMQASTPLESRPRRTPRCWGKPALFLSTTFSPELAEKLLGTKARDPSSPPSYTDSHGIASYHGDCGEGHPHCYNLFE 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1169 543 Gene3D C2 domain 22 143 IPR035892 -
Lele03g1169 543 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 31 138 IPR035892 -
Lele03g1169 543 CDD C2_plant_PLD 1 137 - -
Lele03g1169 543 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 218 253 IPR001736 GO:0003824
Lele03g1169 543 SUPERFAMILY Phospholipase D/nuclease 209 272 - -
Lele03g1169 543 ProSiteProfiles C2 domain profile. 1 114 IPR000008 -
Lele03g1169 543 SUPERFAMILY Phospholipase D/nuclease 366 406 - -
Lele03g1169 543 PANTHER PHOSPHOLIPASE D 301 430 IPR015679 -
Lele03g1169 543 Pfam C2 domain 36 116 IPR000008 -
Lele03g1169 543 Gene3D Endonuclease Chain A 288 416 - -
Lele03g1169 543 SMART pld_4 370 397 IPR001736 GO:0003824
Lele03g1169 543 SMART pld_4 218 253 IPR001736 GO:0003824
Lele03g1169 543 Pfam Phospholipase D Active site motif 219 253 IPR001736 GO:0003824
Lele03g1169 543 Pfam Phospholipase D Active site motif 371 397 IPR001736 GO:0003824
Lele03g1169 543 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 370 397 IPR001736 GO:0003824
Lele03g1169 543 SMART C2_3c 23 113 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1169 Lele-ChrLele03 6844842 6850155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1169 270 374 Phospholipase D Gene Family (Wang group) AT4G35790 34.821 3.47e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1169 03 6844842 6850155 Lele03g1169 03 6844842 6850155 ECH
Lele01g1156 01 6871224 6875762 Lele03g1169 03 6844842 6850155 hybridization
Lele02g1422 02 18537600 18543768 Lele03g1169 03 6844842 6850155 hybridization