Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1150 ATGAAAGGCGACAAATCGAAGGCAGAATCTAAGAAAGCTGATGCCAAGCTTGCTGTGAATAGGAAGGGCGCTGCCGCCACCAAGGCAGGCAGCAAACCAAGCAAGGGGAAGGCGGCGAAAGACCCTAACAAACCAAAGAGGCCGGCCAGTGCCTTCTTCGTTTTCATGGAGGAGTTTAGGAAGCAGTTTAACAAGGAAAATCCTGACAACAAAGCCGTGTCTGCTGTTGGAAAAGCTGCTGGGGCTAAATGGAAGTCCATGTCTGAAGCTGAGAAAGCACCCTACGTTTCTAAAGCAGAGAAACGAAAGGCTGAGTATGAGAAGAATATGAAAGCTTATAACAAGAGACAGGCGGAAGGTTCAAATGCTGCAGATGAAGAAGAATCTGAGAAGTCAATGTCTGAGGTTAATGATGCGGAGGGAGGAGACGAAGAGGGCAGTGATGAGGTCTGCCTGAATTTTAAGAGAACTAAGTTAGCTCTGCTCATAAAGCTTTTAAAATTAATATCTCATGGGCTTTTATGTTCTTGTGTGCAGGAGGAAGATGACGAGTAG 555 0.4613 MKGDKSKAESKKADAKLAVNRKGAAATKAGSKPSKGKAAKDPNKPKRPASAFFVFMEEFRKQFNKENPDNKAVSAVGKAAGAKWKSMSEAEKAPYVSKAEKRKAEYEKNMKAYNKRQAEGSNAADEEESEKSMSEVNDAEGGDEEGSDEVCLNFKRTKLALLIKLLKLISHGLLCSCVQEEDDE 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1150 184 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 145 IPR031061 -
Lele03g1150 184 SUPERFAMILY HMG-box 32 119 IPR036910 -
Lele03g1150 184 Coils Coil 96 116 - -
Lele03g1150 184 MobiDBLite consensus disorder prediction 110 138 - -
Lele03g1150 184 MobiDBLite consensus disorder prediction 1 49 - -
Lele03g1150 184 Gene3D High mobility group box domain 28 130 IPR036910 -
Lele03g1150 184 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Lele03g1150 184 MobiDBLite consensus disorder prediction 1 18 - -
Lele03g1150 184 CDD HMGB-UBF_HMG-box 45 111 - -
Lele03g1150 184 SMART hmgende2 44 115 IPR009071 -
Lele03g1150 184 MobiDBLite consensus disorder prediction 110 147 - -
Lele03g1150 184 Pfam HMG (high mobility group) box 45 114 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1150 Lele-ChrLele03 6742836 6744057 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lele03g1150 HMG_box 9.5e-24 CL0114