Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1135 ATGGTGGGTGGCTCAGACAGCAAAACTGAGATCCAGGGTCATACGCCCACGCCTGGATCCAATTCAAGTTCCGGTTTTCAACCAATAAGCTCACCTTTTGGTGATACAACTTTTACCAAGGTGTTTGTAGGAGGATTGGCATGGGAGACCCAGAGCGAAACCATGCGCCGATACTTTGAGCAGTTTGGCGACATTCTTGAAGCGGTTGTAATTACTGATAGGAATACAGGGCGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGATCCTGAGGCTGCTAGAAGAGCCTGTGCTGATCCAAGTCCTATCATTGATGGAAGGAGGGCCAATTGTAATTTGGCTTCACTTGGACGACCGTGGCCTCCTCTTCCACATGGGCGGTTAAGGCGAGCTCCTGCTTACATTGGAAATTTGCAACCAGCCCGAGGTACCTATGTTGGAGGTTTTGGCTATCAGCAACCACCTTCTTACAGCTATCAGCAAGGATTGGTTTATCCTCATTATGGGTATACAACATATGGACCTGAATATGCATACCCACAGGGTTTGTACAACCCATATATGGGCCAGCAGTATGTTCAGATATATGGAGTGCCTGGTGCAGTGAATAATACTATTTATCCTTATGGGCAGTTAGGTCAAGCTATTCCCAGTAGTCATGGTTATGCAGGAATGCAGGGCTATGCTGTAACTGGTCATCACATTGTACCTTATGGCGGAACCAATGTTAATGCCCTGACTACTTCACCTATGCCTACCATTCAAGTACCATATCCCAGTGGAATTGCTGCACCAATTCCAGGACAACCACAATTTATTGTCCCTGCGCCTTCTCAGTTTATGCAAGGGGCTGGCCCTGACCAAGCAGCTGGCAGGACTAAGAGCAGTGGATCTGCTACATGTGTGGCGGGCTTCCAATCTAGCCTTGCATGTTATATATATTGCATTCTAGAGGTTATATTTAGTCATGCTCACCATCACCATCAAGTTGGGTCGGCGTGCTCCAGATGGCGGAGAAGGAAACTGGGAGATGCAGGGTGCATTTCCATTTGTCCATTTTATATGATGTATTTATACCCCATGCTACCAGCACTCAGGAAGAGTGGCAGTAGTATTGGAGCAATGGGCGCTGGAATAGGTTTCCAGCAGCCATGTAGAAATATGATTTTTTTCATCTTTTAG 1182 0.4679 MVGGSDSKTEIQGHTPTPGSNSSSGFQPISSPFGDTTFTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDRNTGRSKGYGFVTFRDPEAARRACADPSPIIDGRRANCNLASLGRPWPPLPHGRLRRAPAYIGNLQPARGTYVGGFGYQQPPSYSYQQGLVYPHYGYTTYGPEYAYPQGLYNPYMGQQYVQIYGVPGAVNNTIYPYGQLGQAIPSSHGYAGMQGYAVTGHHIVPYGGTNVNALTTSPMPTIQVPYPSGIAAPIPGQPQFIVPAPSQFMQGAGPDQAAGRTKSSGSATCVAGFQSSLACYIYCILEVIFSHAHHHHQVGSACSRWRRRKLGDAGCISICPFYMMYLYPMLPALRKSGSSIGAMGAGIGFQQPCRNMIFFIF 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1135 393 SMART rrm1_1 40 112 IPR000504 GO:0003723
Lele03g1135 393 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 33 119 - -
Lele03g1135 393 MobiDBLite consensus disorder prediction 1 30 - -
Lele03g1135 393 PANTHER BOULE-RELATED 19 253 IPR037366 -
Lele03g1135 393 SUPERFAMILY RNA-binding domain, RBD 20 127 IPR035979 GO:0003676
Lele03g1135 393 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 41 97 IPR000504 GO:0003723
Lele03g1135 393 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 39 116 IPR000504 GO:0003723
Lele03g1135 393 CDD RRM_RBM24_RBM38_like 39 114 - -
Lele03g1135 393 Gene3D - 6 121 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1135 Lele-ChrLele03 6662381 6666951 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1135 29 175 C2H2 Transcription Factor Family AT2G19380 29.747 4.48e-15 75.1