Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1117 ATGCCTGGGAATAAGGTGATAGGGGAGGCGGTGAGGGAGGAAGGCGAGAAGAAAAGGAAGCAAATGTTGTCGTTTTCGAGATCGTCTTCGTCTTCGTCGTCGTCGTCGACTTCGCATGATAGAGAGTATGAAGTTCAGGACCTGAGAGACAGGTTGAAATCGTCGCAAGGAAGCCGATTCCAATTGCTTGAGCATGAGTTGGAGGAGCTCAACCAGAAAAAATTCAGTCGCCACGTCCTTGATGGCATCCGAGGCTTCTCCAAAGATTTCACCATTCATCCAGAGAACAGGTGGTATCGGGCATGGACAAAATTCATATTGCTATGGGCCATATACTCGTCCTTCTTCACCCCAATGGAGTTTGGATTTTTTCGTGGGCTAGACGAGGATCTCTTTATACTGGACATAATTGGCCAAGTTGCATTTCTTGCGGACATTGTTGTCCAGTTCTTCGTTGCTTATATTGACAGTCAGACCTATCGTATGATCTATAAGCCAGCCCCTATAGCTCTTCGGTATCTAAAATCTAGCTTTATCTTTGATCTACTTGGATGTATGCCTTGGGACATCATATATAAGGCTAGTGGAAGAAGAGAGGGAGTAAGGTATCTTCTGTGGATAAGATTATATCGAGTGCGGAAAGTGACTGAATTTTTCCAGAGGCTAGAGAAGGATATACGTATCAATTACATGTTTACTAGGATTGTGAAACTTATGGTAGTTGAACTCTACTGCACCCATACAGCTGCCTGCATCTTCTACTACTTGGCCACCACACTACCTCCATCCCAAGAGGGGTACACATGGATAGGAAGTTTAAAGCTGGGCGACTACAGTTATATGAATTTCAGAGACATTGATCTTTGGAAGCGTTACACAACATCTTTGTATTTCGCTATTGTTACAATGGCCACTGTTGGCTATGGAGACATACATGCAGTAAATATGAGGGAGATGATATTCATAATGATATATGTTTCGTTTGATATGGTTCTCGGTGCTTATTTAATTGGTAACATGACAGCTTTAATAGTCAAAGGATCAAAAACAGAAAAGTTTAGGGATAGAATGGCAGATCTTTTGAAATATATGAATAGAAACAGACTTGGAAGGGACATTCGTGAACAAATAAAAGGCCATATGCGCTTACAGTATGAAAGTAGCTACACTGAACCAGCTGCCATTCAGGAACTGCCCATGTCAATTCGCTCCAAGATATCAAAAGAGTTATACTTGCCATACATCCAGAAGGTCCCACTCTTTAAGAATTGCTCTTCAGAATTTATCAATCAGATCGTTATCAGGCTCCATGAGGAATTCTTTCTCCCAGGTGAAGTGATACTGGAACAAGGAAATGTTGTAGATCAACTATACTTCGTGTGTCATGGTGTGCTGGAGGAAGTAGGCCCCGGTGAAAATGGATCTGAAGACACCGTTTCACTTTTAGAGCCTAACAGTTCATTTGGGCATACATCTATTCTGTGTAACATTCCTCAACCGTACACTGTTCGGGTTTGTGAACTGTGTAGGCTTCTACGGCTTGATAAACAATCATTTACGGATATCCTTGATATATACTTCTATGATGGGAGGAAAGTATTAAACAATCTTCTAGAGGGAAAAGACTCTAGTCGTGGTAAGCAATTGGAGTCAGATATCACGTTCCATATTGGAAAGCAAGAAGCTGAACTTGCTTTGAAGGTCAATAATGCAGCTTTTAATGGGGATCTGAATCATCTTAAAGGATTGATTCGAGCTGGAGCTGATCCAAACAAGACAGATTATGATGGACGGTCACCGTTGCATCTTGCAGCATCTAGAGGATATGAAGACATCACCCATTTCCTTATTCAGGAAGGTGTAGACATCGATATGAGAGATAACTTTGGGAACACGCCCTTACTTGAAGCTGTAAAGAATGGAAACGATCGAGTTGCTTCTTTACTTGTTGGAAAAGGGGCTTCTATGAACATAGAAGACGCCGGTAGTGTTCTATGTAATGCTGTTGCAAGGGGAGATTCAGATTATCTTAAAAGGTTATTATCTTATGGCATGGATCCTAACACGAAAGATTACGATTACCGAAGCCCTCTTCATGTTGCTGCAGCTGAGGGTTTATTCTTAATGGCAAAGTTTCTGATAGAAGCTGGAGGTAGCGTTTTTATCCAAGACAGATGGGGAAATACTCCACTTGATGAAGCCAGGACGTGTGGAAATCGGAATCTGATCAAACTGTTGGAAGATGCAAAGTCTACTCAGTTGTCAAAACTCCCTCATCTCTCCTCAGAACTTAAAGATAAATTACACCCTAAGAAATGTACAGTATTTCCTTTCCACCCATGGGATCCAAAAGAACATAGAAGGCATGGGATTGTACTATGGCTTCCACACACCAATGAAGAGCTTATAGAAAGAGCAGCAGAGCAGCTAGAAGTTTCTAGGGATTGTTCTATTCTATCAGAGGATGCTGGTAAAATTACTGATGCGAACTTGATTAAGGATGGTCAAAAGCTGTATCTAGTCCCTGAAACACATTAA 2538 0.4157 MPGNKVIGEAVREEGEKKRKQMLSFSRSSSSSSSSSTSHDREYEVQDLRDRLKSSQGSRFQLLEHELEELNQKKFSRHVLDGIRGFSKDFTIHPENRWYRAWTKFILLWAIYSSFFTPMEFGFFRGLDEDLFILDIIGQVAFLADIVVQFFVAYIDSQTYRMIYKPAPIALRYLKSSFIFDLLGCMPWDIIYKASGRREGVRYLLWIRLYRVRKVTEFFQRLEKDIRINYMFTRIVKLMVVELYCTHTAACIFYYLATTLPPSQEGYTWIGSLKLGDYSYMNFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMVLGAYLIGNMTALIVKGSKTEKFRDRMADLLKYMNRNRLGRDIREQIKGHMRLQYESSYTEPAAIQELPMSIRSKISKELYLPYIQKVPLFKNCSSEFINQIVIRLHEEFFLPGEVILEQGNVVDQLYFVCHGVLEEVGPGENGSEDTVSLLEPNSSFGHTSILCNIPQPYTVRVCELCRLLRLDKQSFTDILDIYFYDGRKVLNNLLEGKDSSRGKQLESDITFHIGKQEAELALKVNNAAFNGDLNHLKGLIRAGADPNKTDYDGRSPLHLAASRGYEDITHFLIQEGVDIDMRDNFGNTPLLEAVKNGNDRVASLLVGKGASMNIEDAGSVLCNAVARGDSDYLKRLLSYGMDPNTKDYDYRSPLHVAAAEGLFLMAKFLIEAGGSVFIQDRWGNTPLDEARTCGNRNLIKLLEDAKSTQLSKLPHLSSELKDKLHPKKCTVFPFHPWDPKEHRRHGIVLWLPHTNEELIERAAEQLEVSRDCSILSEDAGKITDANLIKDGQKLYLVPETH 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1117 845 MobiDBLite consensus disorder prediction 1 45 - -
Lele03g1117 845 ProSiteProfiles Ankyrin repeat profile. 596 628 IPR002110 GO:0005515
Lele03g1117 845 CDD CAP_ED 420 534 IPR000595 -
Lele03g1117 845 ProSiteProfiles KHA domain profile. 772 845 IPR021789 -
Lele03g1117 845 ProSiteProfiles Ankyrin repeat region circular profile. 629 660 - -
Lele03g1117 845 PRINTS Ankyrin repeat signature 597 612 IPR002110 GO:0005515
Lele03g1117 845 PRINTS Ankyrin repeat signature 645 659 IPR002110 GO:0005515
Lele03g1117 845 ProSiteProfiles Ankyrin repeat region circular profile. 693 725 - -
Lele03g1117 845 Gene3D - 662 756 IPR036770 -
Lele03g1117 845 MobiDBLite consensus disorder prediction 9 23 - -
Lele03g1117 845 FunFam Potassium channel SKOR 100 345 - -
Lele03g1117 845 Pfam Cyclic nucleotide-binding domain 440 524 IPR000595 -
Lele03g1117 845 MobiDBLite consensus disorder prediction 24 39 - -
Lele03g1117 845 Gene3D - 553 661 IPR036770 -
Lele03g1117 845 Pfam KHA, dimerisation domain of potassium ion channel 771 840 IPR021789 -
Lele03g1117 845 SUPERFAMILY Ankyrin repeat 569 748 IPR036770 -
Lele03g1117 845 Gene3D Jelly Rolls 406 528 IPR014710 -
Lele03g1117 845 Gene3D Helix hairpin bin 347 405 - -
Lele03g1117 845 SMART ANK_2a 596 625 IPR002110 GO:0005515
Lele03g1117 845 SMART ANK_2a 557 592 IPR002110 GO:0005515
Lele03g1117 845 SMART ANK_2a 660 689 IPR002110 GO:0005515
Lele03g1117 845 SMART ANK_2a 726 755 IPR002110 GO:0005515
Lele03g1117 845 SMART ANK_2a 629 658 IPR002110 GO:0005515
Lele03g1117 845 SMART ANK_2a 693 722 IPR002110 GO:0005515
Lele03g1117 845 PANTHER POTASSIUM CHANNEL AKT1 68 841 IPR045319 GO:0005249|GO:0006813
Lele03g1117 845 Pfam Ion transport protein 100 345 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Lele03g1117 845 SUPERFAMILY Voltage-gated potassium channels 94 345 - -
Lele03g1117 845 SUPERFAMILY cAMP-binding domain-like 348 537 IPR018490 -
Lele03g1117 845 ProSiteProfiles Ankyrin repeat profile. 693 725 IPR002110 GO:0005515
Lele03g1117 845 PRINTS EAG/ELK/ERG potassium channel family signature 244 254 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele03g1117 845 PRINTS EAG/ELK/ERG potassium channel family signature 135 145 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele03g1117 845 PRINTS EAG/ELK/ERG potassium channel family signature 146 155 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele03g1117 845 PRINTS EAG/ELK/ERG potassium channel family signature 292 309 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele03g1117 845 PRINTS EAG/ELK/ERG potassium channel family signature 336 345 IPR003938 GO:0005249|GO:0006813|GO:0016020
Lele03g1117 845 FunFam Potassium channel KAT2 408 545 - -
Lele03g1117 845 SMART cnmp_10 420 538 IPR000595 -
Lele03g1117 845 ProSiteProfiles Ankyrin repeat region circular profile. 596 628 - -
Lele03g1117 845 Gene3D - 102 346 - -
Lele03g1117 845 ProSiteProfiles cAMP/cGMP binding motif profile. 420 540 IPR000595 -
Lele03g1117 845 Pfam Ankyrin repeats (3 copies) 665 746 IPR002110 GO:0005515
Lele03g1117 845 Pfam Ankyrin repeats (3 copies) 570 660 IPR002110 GO:0005515
Lele03g1117 845 ProSiteProfiles Ankyrin repeat profile. 629 661 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1117 Lele-ChrLele03 6531716 6538280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1117 639 746 Ion Channels AT5G37500 33.333 2.44e-09 58.9