Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1116 ATGGGCCCCATACAACATATCCACGTGTCACCAATAACACAAGTTGCCGCTTCACTTCACCAAGGGCGAACGGCTGACACATTTCTCCCTAGTAAAAGGACATTTATGCCCCCAGCAATACCACTTCTTTTGAATCGCTCTTCGTGCGCGCCAAGTCTGAACGACTGGACCCGGGTCAATCAAAGAAGCGAAGTCTTGTGGTATCCTCGAGCTCAAAACGAAGCCTTAACCATGTCTTTCTCTCTCTTTGAAGCGTGTAGGAAGAGAAAGAGATTGCCCAAGGTTTTCAGGTTTCACTCTTTCGGCGACCCTGGTTGCCCCGTCAGTCCTAACGGACCTTTTAGAGATAACATTCGTCTCTTTCTTCAAGAATGCGGAGAGCTTGAAGATTTCCAGATCCAGGGCATGCCTCTGTGGACCACCTTCCTCATTCATGAGAAATCAAACTCTCTGACCCCTCTTTACACCATTGAAGAGAATGTATACCACTCTACGCACCCCTTCTGCGATCATTGCCGATGTGCAGGCTGGAGCGGCCATTTTGTATCGAAGAGAAGGTACCATTTCATAATCACCGCCGATAATAAACCGTTGACTGAAGGTTTTCTTGATAATCAGAGTCATCTCCTGCATGGAATGATTCATTGCAATGGGTACGGCCATTTGCTCTGTGTTAATGGCATTGAAGGGGGCTCTAAATTTCTCAGTGGCAGAGAAATCATGGGTCTGTGGGACAGGATCTGTACAATTCTTCGAACAAGGGAAATCGCAGTTGAAGATACGTCAAAGAAGCGTTTAATGGATCTTCGCCTACTTCATGGAGTTGCTTATGGCCATTCTTGGTTTGGTAGGTGGGGTTACAGATTTTCTAGTGGAAGCTTTGGTGTCACAGAGCACAATTATAATGCAGCAATCGAAGATCTAAGTTCGTTAGAGCTTGATGAAATCGTTCAATGTTTTGGTAATACAATGTGCCATAAAGAAATCAAAGAAATAATTCGCCACTATAGAGACCTGAGTGAAACCCAGTTGATTACAATCAAGGATCTTCTCAGGTTTATGCTTACCGTCAAGTCTCGAACTCTTCCACCACCCAAGAGACTAGTAGTCAATATCACTGCTCCTCCTTCTTCAACCTTCTGTTCAAAAAGCTCAATGAAATTTGCAATGTCAAGCAAACAAGGCCCATTAAAGGAAAAATCAGTGAGGTACAAAAAGTTCAGTTCTGCAGTGGCTCATATGGATAGTAGGTGGCCTTCAAGGCGCCTTGAATACGCAGCCCAAGTGATAGTAGATGCATTGAAAGAAAACAAAGCAAATAGTTCAGGTTCTGGTGGGATGACTAGGCAAGATGTAAGAGACGCAGCTAGGCTCCACATTGGTGATACAGGCTTGCTGGATTATGTGCTGAAATCATTGAATAATATGATTGTTGGAAACTGCGTTGTCCGTCGAATGGTCAACCCGACAAGCCGAATCCTAGAGTATAACATTCATGAGCTGGGAAATGGGTCTAAATCCCCTGAAGTACGTCCTGGGCTGAAGGTTTTTAATTATATGGAACCTCCAGCAGAGTCAGAACAAGTGCCAGGAATTGATGTTTACTGTGATGTAGCTTATCTGTACAATAATGTCCTATTGGGCTACCCAGATTCAGAACAAGCGGACTTGGCGGTTCAAACAATTCTAGACAGTAGGCATTTTGTGAAGGAATGGACATTAATCGATGAAATAGAGCAAGTTTTGACATTCATATGCCGCTTGATACCCAACTTTGTTGATGATAAACCAGAGAGGAACAAGGAAGTAACCCCAGGTGAGATAGTGATGGTTCCACTGCATGCTACAGTTGGAGACTTGAAGCAAGCAGCTGAGACTGCTCTAAGGGATACTTATTGTATTGCAGAGAGAATCATGGTGACAGAGATCGCAGAGTTGGTGGGAATAAGTGATGAGGAAGTGCTTTTTGGAGTAGTGGAGTCTGGTGTGCATCTGCGTGTGAGGGGAATTGGTTTAGATTTGATTACTCCATTGAAGTATCAGGGAGGATCAGACAACTGGAAGGTGAGATGTGAATGTGGAGCTCAAGATGATGATGGTGAGAGAATGGTGGCATGTGACATATGTGAGGTGTGGCATCACACACGGTGCTGTGGGATAGATGACTCAGAGACTGTGCCACCATTGTTTGTGTGCTCTGCGTGTTGTGATTCACTTGTACCTCCAAGGGTTGATTCTGCTTTTAGCAGCAGCAGCAGCATGGACTGTGCTGATGATTATCTGATTTCCACAGAGCCTAATAACTTTCTGGAATATGGTTATGGGTACTGA 2331 0.4449 MGPIQHIHVSPITQVAASLHQGRTADTFLPSKRTFMPPAIPLLLNRSSCAPSLNDWTRVNQRSEVLWYPRAQNEALTMSFSLFEACRKRKRLPKVFRFHSFGDPGCPVSPNGPFRDNIRLFLQECGELEDFQIQGMPLWTTFLIHEKSNSLTPLYTIEENVYHSTHPFCDHCRCAGWSGHFVSKRRYHFIITADNKPLTEGFLDNQSHLLHGMIHCNGYGHLLCVNGIEGGSKFLSGREIMGLWDRICTILRTREIAVEDTSKKRLMDLRLLHGVAYGHSWFGRWGYRFSSGSFGVTEHNYNAAIEDLSSLELDEIVQCFGNTMCHKEIKEIIRHYRDLSETQLITIKDLLRFMLTVKSRTLPPPKRLVVNITAPPSSTFCSKSSMKFAMSSKQGPLKEKSVRYKKFSSAVAHMDSRWPSRRLEYAAQVIVDALKENKANSSGSGGMTRQDVRDAARLHIGDTGLLDYVLKSLNNMIVGNCVVRRMVNPTSRILEYNIHELGNGSKSPEVRPGLKVFNYMEPPAESEQVPGIDVYCDVAYLYNNVLLGYPDSEQADLAVQTILDSRHFVKEWTLIDEIEQVLTFICRLIPNFVDDKPERNKEVTPGEIVMVPLHATVGDLKQAAETALRDTYCIAERIMVTEIAELVGISDEEVLFGVVESGVHLRVRGIGLDLITPLKYQGGSDNWKVRCECGAQDDDGERMVACDICEVWHHTRCCGIDDSETVPPLFVCSACCDSLVPPRVDSAFSSSSSMDCADDYLISTEPNNFLEYGYGY 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1116 776 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 89 743 - -
Lele03g1116 776 CDD PHD_MMD1_like 691 735 - -
Lele03g1116 776 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 678 739 IPR013083 -
Lele03g1116 776 ProSitePatterns Zinc finger PHD-type signature. 691 735 IPR019786 -
Lele03g1116 776 SUPERFAMILY FYVE/PHD zinc finger 683 741 IPR011011 -
Lele03g1116 776 SMART PHD_3 690 736 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1116 Lele-ChrLele03 6527402 6530168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1116 87 741 PHD Transcription Factor Family AT5G22260 33.898 4.50e-114 359