Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1114 ATGACTAGGAAGAAGGTGAAGCTCGCGTTCATTGCGAACGATTCTGCGAGAAAAGCCACTTACAAGAAAAGAAAGAAGGGTTTGATCAAGAAGATCGACGAACTCACCACTCTCTGCGGAATCGAGGCCTGTGCGATCGTTTACAGTCCGTACGATTCTCAGCCGGAGGTTTGGCCGTCGCCGTTCGGAGTTCAACGTGTGCTGTCGAAGTTCAGGAGGATGCCGGAGCTGGAGCAGAGCAAGAAGATGGTGAACCAGGAAGGGTTTCTGAAGCAGAGGATTCTGAAAGCGAAGGAGCAGTTGAAGAAGCAGAGGAAGGACAATAGAGAGAAGGAGATGACTCAGATCATGTATCAGTATCTGAGTGCAGGGAAGGTTCTGCATAACATGACGATGCTCGATCTAAACGATTTGGCGTGGCTCGTCGAGCAGAATCTGAAGGACGTTAACCGGAGGATCGAGACGCTGGACAAGAGGGCTCAGAGTCAGAGGGCCGCTGATGTGGCGGCCATGGCCGCGGCTGATGCGGCGGCGAGGAGCCGAGATAAGGCGAAGGCGGAGCAGGTGGATGGGAATGGGATGGAGGTGGCCGGAGGCGGCGGGGACGCCATGCCGAAGCAGCAGTGGTATATGGACATGATGAATGGTGGTGCTGATGAAACGCTGACGTTTGGAGATGTGAGTCACTCCAATGCGTTTTGGCATAATCACTATTTCCCTTGA 723 0.5353 MTRKKVKLAFIANDSARKATYKKRKKGLIKKIDELTTLCGIEACAIVYSPYDSQPEVWPSPFGVQRVLSKFRRMPELEQSKKMVNQEGFLKQRILKAKEQLKKQRKDNREKEMTQIMYQYLSAGKVLHNMTMLDLNDLAWLVEQNLKDVNRRIETLDKRAQSQRAADVAAMAAADAAARSRDKAKAEQVDGNGMEVAGGGGDAMPKQQWYMDMMNGGADETLTFGDVSHSNAFWHNHYFP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1114 240 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele03g1114 240 Coils Coil 91 114 - -
Lele03g1114 240 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Lele03g1114 240 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lele03g1114 240 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lele03g1114 240 PANTHER MADS BOX PROTEIN 3 150 - -
Lele03g1114 240 Coils Coil 146 166 - -
Lele03g1114 240 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele03g1114 240 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele03g1114 240 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele03g1114 240 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Lele03g1114 240 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Lele03g1114 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1114 Lele-ChrLele03 6515955 6516677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1114 1 176 Type I MADS-box Gene Family AT5G48670 61.364 1.21e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele03g1114 SRF-TF 7.1e-17 No_clan