LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele03g1113	ATGGTTTTGTCTTGGTCCAGAAGAAGAGTTTTTCGCCATGCCCGCAAAGGAAAAGACCTTCCCGGCGCCGGAGACTTGGACGTCGATGTCGAGGTTGTTGTTCCGACCCACTTCCGGTGTCCGATTACTCTAGACTTGATGACAGATCCGGTGACTTTATCCACCGGAATCACCTACGACAGGGACAGCATCGAGAAGTGGGTGGAGTCTGGTAGCCGGACGTGCCCCGTCACCAAACAGCCTTTGACCGGCTTCGACGTGATTCCTAACCACGCCTTACGTAGGATGATCCAAGAATGGTGCGTCGAGCATCGCTCCCACGGCATCGAGAGAATCCCCACCCCGAGAATCCCGGTTACACAGTACGAGGTTTCCGATATCTGTACGAAAATAATGTCTGCAACGCAACGTGGGGAACACAACAAGTGCCAGCAGTTGGTGGATAAGATCAAGATCTGGGGCAGAGAAAGCGAGAGGAACAAGAAGTGTATAGTTCAAAACGGGGCCGCCGCCACCGCATTAGCCAACGCTTTCAGCTCTTTCTCAAACGCTTCGATTGAGAAAAACGTTGGCCTCTTAGAGGATCTTCTGGGGATTTTAACATGGATTCTTCCGAAGAAACAAGGGGATTATAATCAATCAATGTTAAGTTCTGAAGCGTCTTTAGGTTGCATGGTTTGGTTCCTCAACAGCAAAGATCTCTCATCAAGGCAAAACGCAGCTATGGTGCTGAAGCAGGTTCCTATAGAGCCATTAGCAAAAACTGAAGGTGTGATTGAAGCTTTAGTGAAGATGATCAAGGAACCAGTAGGCCCTTCTGCAACAAAAGCAAGCCTGAAAGCAATTTTCCAGATGGTTTCCTCATCAAACGAGAAAGAGAAGATCATCAAAACATGCGTGGATTTAGGCCTGGTTATGTTGTTGCTTGAAGCCCTAGTGGATGGAGATAGAGGGATATGTGAGAAAGCTTTGGGAGTGTTGGATTGTATATGTGATTACAACGAAGGAAAAGAGGTGGCTAAGGATAATGTTCTAACTTTGCCTCTTGTGGTGAAGAAGATACTGAGGGTTTCAGGGTTGGCTTCTGATTTTGGAGTTTCTATTCTTTGGAAGCTTTGTGAGAAGATGGATGAAGATATGGTGAAGGAGGCAGTTCAAGTGGGAGCGTTTCAGAAAGTTCTGGTTTTGTTGCAGGTTGGGTGTGAAGAGAACACCAAGGGAAAGGCCACTGATTTGTTGAAGTTGCTGAATGCTTATAAGAACTCTGTGGAGTGTGTTGATTCGTCTTTAGATTTCAAGTACCTTAAGAAGCCCTTTTGA	1320	0.4667	MVLSWSRRRVFRHARKGKDLPGAGDLDVDVEVVVPTHFRCPITLDLMTDPVTLSTGITYDRDSIEKWVESGSRTCPVTKQPLTGFDVIPNHALRRMIQEWCVEHRSHGIERIPTPRIPVTQYEVSDICTKIMSATQRGEHNKCQQLVDKIKIWGRESERNKKCIVQNGAAATALANAFSSFSNASIEKNVGLLEDLLGILTWILPKKQGDYNQSMLSSEASLGCMVWFLNSKDLSSRQNAAMVLKQVPIEPLAKTEGVIEALVKMIKEPVGPSATKASLKAIFQMVSSSNEKEKIIKTCVDLGLVMLLLEALVDGDRGICEKALGVLDCICDYNEGKEVAKDNVLTLPLVVKKILRVSGLASDFGVSILWKLCEKMDEDMVKEAVQVGAFQKVLVLLQVGCEENTKGKATDLLKLLNAYKNSVECVDSSLDFKYLKKPF	439

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele03g1113	439	Gene3D	-	119	430	IPR011989	-
	Lele03g1113	439	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	27	111	IPR013083	-
	Lele03g1113	439	SUPERFAMILY	ARM repeat	160	413	IPR016024	-
	Lele03g1113	439	CDD	RING-Ubox_PUB	38	80	IPR045210	-
	Lele03g1113	439	Pfam	U-box domain	34	105	IPR003613	GO:0004842\|GO:0016567
	Lele03g1113	439	ProSiteProfiles	U-box domain profile.	33	107	IPR003613	GO:0004842\|GO:0016567
	Lele03g1113	439	SMART	Ubox_2	37	100	IPR003613	GO:0004842\|GO:0016567
	Lele03g1113	439	PANTHER	WDSAM1 PROTEIN	32	421	IPR045185	GO:0061630
	Lele03g1113	439	SUPERFAMILY	RING/U-box	32	110	-	-
	Lele03g1113	439	FunFam	RING-type E3 ubiquitin transferase	34	105	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele03g1113	Lele-ChrLele03	6513146	6514465	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele03g1113	31	439	U-box Gene Family	AT5G37490	47.356	4.21e-119	353