Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1104 ATGGTTCTCTCGAAGACAGCTTCTCAGACGGACGTTTCTGTCCACTCCACGTTCGCGTCACGCTATGTGAGAGCGGCGCTGCCTAGGTTCAAGATGGCGGAGCATTCCATCCCGAAGGAGGCAGCGTACCAGATCATCAACGACGAGCTCATGCTCGACGGTAATCCCAGGCTCAACCTCGCCTCCTTCGTCACCACCTGGATGGAGCCCGAGTGCGACAAGCTCATCATATCCTCCATCAACAAGAATTACGTCGACATGGATGAGTATCCCAATCGGTGTGTGAACATGATAGCCCATCTTTTCAATGCGCCACTTCAAGATTCAGAACCTGCCGTCGGTGTTGGCACAGTTGGCTCATCGGAGGCCATCATGTTAGCTGGCTTGGCTTTCAAAAGAAAGTGGCAGAACAAAAGAAGAGCAGAGGGCAAGCCCATCGACAAACCCAATATTGTCACTGGTGCTAATGTTCAGGTTTGCTGGGAGAAATTCGCAAGGTACTTTGAGGTGGAGCTGAAAGAGGTGAAGCTGAGGGAAGATTACTTCGTAATGGATCCTGAAAAAGCAGTGGAAATGGTGGATGAGAACACCATCTGTGTCGCTGCTATCCTTGGTTCCACCCTCAATGGAGAATTCGAAGACGTGAAACGGTTAAATGATCTACTCATTGAGAAGAATAATGAAACTGGATGGGATACTCCAATTCATGTGGATGCAGCGAGTGGTGGATTCATTGCACCATTTATATATCCAGACCTTGAATGGGACTTTCGCTTGCCACTTGTGAAGAGCATCAACGTTAGTGGACACAAGTATGGTCTTGTGTATGCTGGCATCGGTTGGGTCATCTGGAGAAGTAAGGAAGATTTGCCTGACGAACTCATCTTCCACATTAACTACCTCGGAGCTGATCAACCCACCTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAGTCATTGCTCAGTATTACCAGCTTATCCGCTTGGGCTATGAGGGATATAGGAATGTGATGGAGAATTGCAGGGACAACATGATTGTGCTGAAAGAGGGGTTGGAGAAAACCGGGCGCTTTAGCATCATATCAAAAGATGAAGGAGTGCCATTGGTGGCCTTCACTTTGAAGGATACAAGCCACTTCAACGAATTCCAGATCTCTGATTTCTTGAAGCGCTACGGCTGGATCGTGCCGGCCTACACTATGCCTCCAGATGCCCAGAGCGTCACCGTCCTCCGTGTCGTCATCAGGGAGGACTTCTCTCGAACATTTGCCGAGCGTCTCGTCATTGATATCCAGAAAGTCTTGCACGAGCTCGATTTGCTTCCAGGCCGGCCCATCGAGAACACCACCGTCAGCGTCACGGCGGAGATGGCAGAAAACGGCAATCTCGGGCCCAAGAAGAGCGAACTTGAGACCCAAAGGGAAATCACTATGGCCTGGAGGAAGTTCGTGTCCGACAGGAAGAAGATGAACGAGAAGATGAACGGCGTTTGTTAA 1497 0.4977 MVLSKTASQTDVSVHSTFASRYVRAALPRFKMAEHSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLIISSINKNYVDMDEYPNRCVNMIAHLFNAPLQDSEPAVGVGTVGSSEAIMLAGLAFKRKWQNKRRAEGKPIDKPNIVTGANVQVCWEKFARYFEVELKEVKLREDYFVMDPEKAVEMVDENTICVAAILGSTLNGEFEDVKRLNDLLIEKNNETGWDTPIHVDAASGGFIAPFIYPDLEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRSKEDLPDELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYRNVMENCRDNMIVLKEGLEKTGRFSIISKDEGVPLVAFTLKDTSHFNEFQISDFLKRYGWIVPAYTMPPDAQSVTVLRVVIREDFSRTFAERLVIDIQKVLHELDLLPGRPIENTTVSVTAEMAENGNLGPKKSELETQREITMAWRKFVSDRKKMNEKMNGVC 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1104 498 Gene3D - 355 442 - -
Lele03g1104 498 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 375 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lele03g1104 498 Gene3D - 66 354 IPR015421 GO:0003824
Lele03g1104 498 FunFam Glutamate decarboxylase 355 442 - -
Lele03g1104 498 FunFam Glutamate decarboxylase 1 65 - -
Lele03g1104 498 SUPERFAMILY PLP-dependent transferases 15 438 IPR015424 -
Lele03g1104 498 PANTHER GLUTAMATE DECARBOXYLASE 1 489 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lele03g1104 498 FunFam Glutamate decarboxylase 66 354 - -
Lele03g1104 498 Gene3D - 1 65 - -
Lele03g1104 498 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 438 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1104 Lele-ChrLele03 6447188 6449111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1104 1 498 Calmodulin-binding Proteins AT5G17330 81.225 0.0 859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1328 25 9083100 9083915 Lele03g1104 03 6447188 6449111 CCT
Lele01g1102 01 6471015 6472569 Lele03g1104 03 6447188 6449111 hybridization
Lele02g1135 02 7271917 7282026 Lele03g1104 03 6447188 6449111 hybridization