Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1100 ATGGCTATTCAGGATCATAATGAAGTTTCTAGATACAATGGTCTTCCACTAGAAACTGCAGTATCTCTGAGTTCTGGCCTACGTTCTGCTTCACGTGTGCAACTAAACGATCAGATTTCTACTGGGAAAGACCGTGCTCCAAAGGTAAGGAAACCATACACCATAACGAAACAGAGGGAGCGATGGACTGATGAAGAGCATAAGAAATTCATTGAAGCTCTGAAACTCCATGGCAGGGCATGGCGAAAGATTGAAGAACATATTGGCACAAAGACTGCAGTTCAGATTCGAAGCCATGCTCAGAAGTATTTCACAAAGGTTCTTCGTGAGTCTACTGGGATCTGCATAAGCTCAGAGGATTCCATTGAAATCCCACCTCCACGACCAAAGCGAAAGCCTTCTCATCCTTATCCTCGTAAGCTGGTCGAGTTCCCTGATAAAGAAATCTCCAACGCAGACCGGACAATGAGGTCTGATTCTCTCAAGTCATCAGAATCTGATCAAGAAAACCAGTCTCCAAAATCAGTGTTATCTACTCTTGGTTTAGAAACTCTCGGATGCTCTGATTCATATAAACCAGATGGAAGTCTGTTTGAGGAAGATGGTTCTGCCTCAAATGATCTACAAACTCCTCTGAAATTTGAGCTCTCCCCTAAAGAGAGTGTTTCCACCAAAGAAGAACCTTGTGGTCGGGTTGTTAAGCTTTTTGGGACGAATCTTCTGGTAAAAGATAGTTGTCCAACAAAGAAGAATTCTTCAGATATAGCAGAAACTCCTGCTGCTGGTTTTGCTCCTTGGAGGGGTCTTTCCCACAATAGGGAAGTTGAAGATAATAAAGTTGAAAAGGAAGTATCTTGGTGTGGTTCAAACATTACTAGCTCAATAAATGATGGGGACAATAATGATGAAAACCCAGATGTTGAAGCCAGATCAAGTCAAATGCATGGCTACAGAAAGGGTTCAGAAAAATTGAGTATTTTTGGCTATTACATGACAACACCCACAGAACCTTCAACCATATCTGAATTATTGGAGAGGCCTAAAGGGTTTGTGCCATATAAGAGATTCATAGCAGAGAGAGAGAATCGGCCCTTGCCTGTAACAATGGAGGAGAGGGATGGCCAACGCATTCTCCTTTCATTGTAG 1146 0.425 MAIQDHNEVSRYNGLPLETAVSLSSGLRSASRVQLNDQISTGKDRAPKVRKPYTITKQRERWTDEEHKKFIEALKLHGRAWRKIEEHIGTKTAVQIRSHAQKYFTKVLRESTGICISSEDSIEIPPPRPKRKPSHPYPRKLVEFPDKEISNADRTMRSDSLKSSESDQENQSPKSVLSTLGLETLGCSDSYKPDGSLFEEDGSASNDLQTPLKFELSPKESVSTKEEPCGRVVKLFGTNLLVKDSCPTKKNSSDIAETPAAGFAPWRGLSHNREVEDNKVEKEVSWCGSNITSSINDGDNNDENPDVEARSSQMHGYRKGSEKLSIFGYYMTTPTEPSTISELLERPKGFVPYKRFIAERENRPLPVTMEERDGQRILLSL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1100 381 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Lele03g1100 381 MobiDBLite consensus disorder prediction 119 176 - -
Lele03g1100 381 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Lele03g1100 381 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Lele03g1100 381 FunFam protein REVEILLE 6 isoform X1 61 109 - -
Lele03g1100 381 Pfam Myb-like DNA-binding domain 59 104 IPR001005 -
Lele03g1100 381 SUPERFAMILY Homeodomain-like 53 106 IPR009057 -
Lele03g1100 381 PANTHER SWI/SNF COMPLEX-RELATED 45 301 - -
Lele03g1100 381 Gene3D - 61 107 - -
Lele03g1100 381 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Lele03g1100 381 SMART sant 58 106 IPR001005 -
Lele03g1100 381 MobiDBLite consensus disorder prediction 292 313 - -
Lele03g1100 381 MobiDBLite consensus disorder prediction 124 164 - -
Lele03g1100 381 CDD SANT 61 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1100 Lele-ChrLele03 6418391 6420399 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele03g1100 Myb_DNA-binding 8.1e-15 CL0123