Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1097 ATGTTACTGGATGAGAAAACTTTGATTTGGTGTTCTGGGCAAAAGGAAAAGCATTTGCCACTGAGTGAAGTTACAAGAATTGTTCAAGAGCAGGGAAATATGAGGTCCCAGAGACAAAGCCAACCTGAAAAAGATTGCCATTCATTTTCACTAATATATGCAAATGGTGAACGCTCACTTGATTTGGATACTGTTGAATTTGCTCAGGTACACAGCTTACATGCAAGTCCTAACTTCTCACTTTCAGAAAGGTGCTTCTCTGAGGGCTTATCAGATGCATCTGATAGTATTTATTCTCTGGAGTCTTTCCCATACAATTCTCGGAATTCTCGGAGCATAATGGATATTACAGTCCCAGGTTCTGCACATGCTGACACAGAGTATGAGAAGAATTCGTCCTATAGGCGTATGCCTCCTCCTACCTCTCCCCATGTTGGAAACAACAATGTATTGAAGGATGTCATGGTATGGGGTGAAGAAATTGTACGAGGTGGTAATGATCATAGTACATTGCCAAAGTTACTAGAATCCACCGTGATGCTAGATGTACAGAATATAGCTTTAGGAGGAAAGCATGCAGTCTTAGTCACAAAACAAGGTGAAATTTTCTGCTGGGGTCAAGGAAAAGGGGGAAGGCTAGGGCACAAAATTGACATTGATGTTAGTTCTCCGAAAATTGTTGATTCTCTTAATGGGATCCATGTAAAATCTGTTGCCTGTGGCGAGTATCATACATGTGCTCTGACAGACACCGGTGTAGTATATGCATGGGGAAATGATGGTGGTTGTACAGATTCTGTAGGTTATGGGAAACGTAGAAGTCAGTGGATACCGCATAAACTTTCGGGACCTTTAGATGGTATTAGTATTTCTAGTATTGCTTGTGGGGAATGGCATACTGCAATTGTCTCTAACTGTGGAGGACTATTTACATATGGTGATGGTACTTTTGGAGTTCTAGGGCATGGGAATCTTCAGAGCATTTCTCAACCGAAAGAAGTTGAGTCTCTTAAAGGTAAGCGAGTGAGGTCCGTTGCTTGTGGATCATGGCACATGGCAGCTGTTGTAGAAATCGTGACTGCCCGTTGTAGATACAATAATTCTTGTAAGCTGTTTACCTGGGGCGATGGAGATGGTGGGCGGCTTGGTCATGCTGATAATGGCAGGAAGCTTTTTCCAGCATGTGTTACTCAACTTGTGGATCATGATTTTGTTCAAGTATCTTGTGGAAGAATGTTGACCATCGCGCTTACTAATTTAGGTAAAGTTTTTACCATGGGAAGTAAGGTTCATGGACAGCTAGGAAACTCTCATGCCAAGGATAAGACTGTGAATCTTTCAGCTTGTAGCAGTTGTGAGCTTCCATTTGGGTTCAGAAGAAAGAGGCATAACTGCTATAACTGTGGTCTTCTCTTTTGCAATTCATGTAGCACTAACAAAGTTACAAATGCATCTCTAGCCCCAAGTAGGAACAAGGCTTTTCGGGTTTGTGATCAGTGCTTTCGTAAATGCCAAGGAAGTATTACTCACTCTCCTAAGGTATCAAAGTTGCAAAATCATAAAACTATGCAGCATCCGAAGCGCCGGACTAAATTTCCTTATCTGACAGAAGACGAAGGGGAAACAGCAGTATCCCCGGGTCCTCTGTCATCTTTCAGTCAATCGTGCTACATGAAAAGCATGCCTAGCGGAAGGAAGGACTGGAAAAATCAACAAGAAAACCAGAAACATGTAGAAAACTTTTCTTCGGTGTTGTTGGGTGGGGTGCCACAATGGGGGAAAGTTTCCTGCCCTGATATGTTTAAAACAAATTGTAAAGAAAATTCTTTCATGCATGTTTCTTCGTTGAAAAACAAATTATCTTCTTCTAATCCATTGAGACTAGAATCTACAGTATCCAGGATCCCTAATGCGGAGAAAGATACGCCAAAATCCAAATTTGGGAGAAGCAAATTCGTCCAAAGTGGTAAATCGAGTGAGGATTCTCAGGTCACCGGAGTTCAATCTCAGCAAGATGGTGGTAACAAAGGATCAACTGATGAATGGATAGAACAGTACGAACCCGGTGTGTACATCACTCTTACTTCCTTACCATGTGGACAAATTGGCCTTAAAAGAGTGAGATTCAGCCGGAAACGATTCTCTGAGAGAGAAGCAGAGCAGTGGTGGGAAGAGAATCACGCGAGAGTGTGCCGTGATTATGGGGTGGAAGGATACACGTTGCTCTTTCTTAGTTCTTTAGTGTGTGTGTGTCCTGTCAATTTTGTTGTGGAAGCTTCTGATCCGTGTGGGGCCCTGCGATGCCGAGGGGTGAGTCTTGACGAGAGAGAATGTGAAGCTGCTTCTTCTGGCATTCAGGATGCTTATGCTCTCTGTCGTGTGATCAAGAAGACTGCAGTTATAACTATGAAAATCACAGATCATTACTTGAATGGAAATCAGATTATGAATATGAGTGATCAGTCATCGAGCATGGAACTCTACTCTGAAGGAAGATCAGGAGAAGATTTAGATCAGAGCTCAGATTATCTGATGCCTATGGATCCTAATAGCTCACCCCATAATATTGGAAATCCCCCTTCAGGACCAAGAGATAACCATGGCAAATGGTCACAGACCCAGTTCTTATCTGAAAATCCATTCTCTCTTCCAAATTCTTCTTCATTATTTTCCAACTATGGTTCCATACCTTACCCTCCATCCAAGGTGGATATTGCACTAGAATGTGCCAGGATGCAGCATAGGTTTTCTCCAATGGAGGACTTTCCTTCTGAACTGAAGATGCAAGCACAACATGGTGGTGGGACCAAAAATGAAGCTGATGAGTTATTACAGGAGATTCTTTCAGTTGCTCATGCTTCTCAGGAACTCATAAACCAGTCTTCTAATAACTATTCTTGTCGCTCATGGGGTGGTACTACTAGTACTGCAAACCACCAGCATTATGCTCCTTCTGAACAAGAACATGATTTCACTTTCATGGTTGGCAGAGATAGTACTACTGCTAATGACTATAACTATTATAATAGCAATGCCTTCTGGGAAGATCCAGTAAACACTTCAAGGTCGATGGAGATTGGAGATCTGGATGATGATTTCAAAGCAGAGAGGATCGTTGAGAATTTAAGATGGGTTGGCATGTCAAGCAAGGATTTGGAAATTAAGAGCTATATGGAAGATCAGAAAATTGTTCCAATTGAGGATATTTCTAGTTTCCGAGCAAACAGGGAGGGGAATGAACTGCTGCAAGCAGAATGTGATAATCAGCAAGAAAATAGCGGCAATGAACCGAATGACACAGATATAAACGACATCTCATTAGGGTTCATCAACGAGGATGACGCTAGTGAGAACTTGATAGATGAACAAGGCGATGATTATTCGAGTTCTCCGAGTTTTGAGGTGGTTGAAGAAGTCAAAGTGATTAGCCATGGAATGTTTGTGTCCACAAGACAAGTAGCTGACACATTCTTTCACCAAATAGTTCCTTCACAAACCCTCAAGAAACTTGAAGGCCTGTGTGATGAAGACAATAACAAGTCCATTGTATTCATATTTTCACATCTGCTGATGATGCATTGTATTTATTATTCAGATTATGATGAGAGAAGTTGGAGTTGTGGTGCTGATAATAATTGCAACAATAAGAGCATGAAGAGAATGAGAGAATATGAAGATGATGATGAGAAGGAAAAAGTTTGGTTTGTGAGCATCAAAAGTGGGAAAGGATTCAGTGTGGTGGTGAAGAAGACAGGGATTTTCTCACAGTTTCTTTTGCTCTTTGTACCATGTGGGCTAACCACATCATAG 3810 0.4168 MLLDEKTLIWCSGQKEKHLPLSEVTRIVQEQGNMRSQRQSQPEKDCHSFSLIYANGERSLDLDTVEFAQVHSLHASPNFSLSERCFSEGLSDASDSIYSLESFPYNSRNSRSIMDITVPGSAHADTEYEKNSSYRRMPPPTSPHVGNNNVLKDVMVWGEEIVRGGNDHSTLPKLLESTVMLDVQNIALGGKHAVLVTKQGEIFCWGQGKGGRLGHKIDIDVSSPKIVDSLNGIHVKSVACGEYHTCALTDTGVVYAWGNDGGCTDSVGYGKRRSQWIPHKLSGPLDGISISSIACGEWHTAIVSNCGGLFTYGDGTFGVLGHGNLQSISQPKEVESLKGKRVRSVACGSWHMAAVVEIVTARCRYNNSCKLFTWGDGDGGRLGHADNGRKLFPACVTQLVDHDFVQVSCGRMLTIALTNLGKVFTMGSKVHGQLGNSHAKDKTVNLSACSSCELPFGFRRKRHNCYNCGLLFCNSCSTNKVTNASLAPSRNKAFRVCDQCFRKCQGSITHSPKVSKLQNHKTMQHPKRRTKFPYLTEDEGETAVSPGPLSSFSQSCYMKSMPSGRKDWKNQQENQKHVENFSSVLLGGVPQWGKVSCPDMFKTNCKENSFMHVSSLKNKLSSSNPLRLESTVSRIPNAEKDTPKSKFGRSKFVQSGKSSEDSQVTGVQSQQDGGNKGSTDEWIEQYEPGVYITLTSLPCGQIGLKRVRFSRKRFSEREAEQWWEENHARVCRDYGVEGYTLLFLSSLVCVCPVNFVVEASDPCGALRCRGVSLDERECEAASSGIQDAYALCRVIKKTAVITMKITDHYLNGNQIMNMSDQSSSMELYSEGRSGEDLDQSSDYLMPMDPNSSPHNIGNPPSGPRDNHGKWSQTQFLSENPFSLPNSSSLFSNYGSIPYPPSKVDIALECARMQHRFSPMEDFPSELKMQAQHGGGTKNEADELLQEILSVAHASQELINQSSNNYSCRSWGGTTSTANHQHYAPSEQEHDFTFMVGRDSTTANDYNYYNSNAFWEDPVNTSRSMEIGDLDDDFKAERIVENLRWVGMSSKDLEIKSYMEDQKIVPIEDISSFRANREGNELLQAECDNQQENSGNEPNDTDINDISLGFINEDDASENLIDEQGDDYSSSPSFEVVEEVKVISHGMFVSTRQVADTFFHQIVPSQTLKKLEGLCDEDNNKSIVFIFSHLLMMHCIYYSDYDERSWSCGADNNCNNKSMKRMREYEDDDEKEKVWFVSIKSGKGFSVVVKKTGIFSQFLLLFVPCGLTTS 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1097 1269 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 443 616 - -
Lele03g1097 1269 SUPERFAMILY RCC1/BLIP-II 154 443 IPR009091 -
Lele03g1097 1269 Gene3D - 1 69 IPR011993 -
Lele03g1097 1269 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 252 306 IPR000408 -
Lele03g1097 1269 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 200 251 IPR000408 -
Lele03g1097 1269 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 443 505 IPR017455 -
Lele03g1097 1269 Pfam Regulator of chromosome condensation (RCC1) repeat 307 355 IPR000408 -
Lele03g1097 1269 Pfam Regulator of chromosome condensation (RCC1) repeat 371 417 IPR000408 -
Lele03g1097 1269 Pfam Regulator of chromosome condensation (RCC1) repeat 200 248 IPR000408 -
Lele03g1097 1269 Pfam Regulator of chromosome condensation (RCC1) repeat 252 302 IPR000408 -
Lele03g1097 1269 SMART fyve_4 438 506 IPR000306 GO:0046872
Lele03g1097 1269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 505 IPR013083 -
Lele03g1097 1269 MobiDBLite consensus disorder prediction 844 871 - -
Lele03g1097 1269 MobiDBLite consensus disorder prediction 821 871 - -
Lele03g1097 1269 MobiDBLite consensus disorder prediction 648 678 - -
Lele03g1097 1269 Gene3D - 361 451 IPR009091 -
Lele03g1097 1269 Gene3D - 145 360 IPR009091 -
Lele03g1097 1269 Pfam Transcription factor regulating root and shoot growth via Pin3 680 734 IPR013591 -
Lele03g1097 1269 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 369 420 IPR000408 -
Lele03g1097 1269 PRINTS Chromosome condensation regulator RCC1 signature 202 218 IPR000408 -
Lele03g1097 1269 PRINTS Chromosome condensation regulator RCC1 signature 410 428 IPR000408 -
Lele03g1097 1269 PRINTS Chromosome condensation regulator RCC1 signature 252 268 IPR000408 -
Lele03g1097 1269 PRINTS Chromosome condensation regulator RCC1 signature 183 196 IPR000408 -
Lele03g1097 1269 PRINTS Chromosome condensation regulator RCC1 signature 309 323 IPR000408 -
Lele03g1097 1269 PRINTS Chromosome condensation regulator RCC1 signature 293 309 IPR000408 -
Lele03g1097 1269 ProSiteProfiles BRX domain profile. 680 735 IPR013591 -
Lele03g1097 1269 MobiDBLite consensus disorder prediction 621 638 - -
Lele03g1097 1269 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 307 358 IPR000408 -
Lele03g1097 1269 MobiDBLite consensus disorder prediction 621 680 - -
Lele03g1097 1269 Pfam FYVE zinc finger 445 505 IPR000306 GO:0046872
Lele03g1097 1269 SUPERFAMILY FYVE/PHD zinc finger 446 510 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1097 Lele-ChrLele03 6391214 6403123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1097 773 1167 NAC Transcription Factor Family AT1G65910 38.084 3.99e-52 193