Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1094 ATGAAGATATTCCGGAAGCATGGTTTTTGTTCAAAGATGATGGAAGAAGAAGAAGAAGGAAGACTAGTGAGTTTCCTAAGATGGGCAGGAGAGCTTGGAATATCAGACGCGGCAATCATCAATCTACCTCAACATTCTCTTTCCTGTCTGGGTTATTCTCTCTGCGTCTCCCATTTTCCTCATTCTGGCGGTAGAGGTTTGGGTGCTGTGCGAGATCTTAGGAGTGGAGAATTGATCCTCAGAGTTCCAAAATCTGCCTTAATGACATCAGAGAATGTCATGCAAGATAAGAAGCTTTCCGTTGCTGTTAATAACCACCCTCATCTCTCATCCGCGCAGATATTGATCGTTTGCTTATTATATGAAATGGGCAAAGGAAAATCTTCAAAGTGGCTTCCTTACCTCATGCATTTGCCGCATACTTATGACATACTAGCTACATTCGGTGAATTTGAGAAACAAGCTCTTCAAGTGGATGAGGCTCGGTGGGTCACAGAAAAGGCTGTATTACAGGCCAAATCAGAGTGGAAAGAAGCCAATGCTTTGATGGAAGAAATCAAACTCAAGTCCCAACTTTTAACGTTCAAGGCATGGCTTTGGGCTACTGCAACGATATCCTCGCGGACATTGCACATACCATGGGATGAAGCTGGGTGTTTATGCCCTGTGGGTGACTTATTTAATTATGATGCACCTGGAAGGGAGCCATGTGATCCTGAAGATAAGGAGAATCTATCATCCAACTCGTCCTTCCAAGTCACTTCTGTCTCGAATGTAGAGGAGCTTGATTCTCATTCCCAGAGATTAACAGATGGTGGGTTTGAGGAAGATGTTAATTCATATTGCTTTTATGCTAGAGAAAATTACAAGCAAGGAGAGCAGGTTTTATTATGCTATGGACTGTACACAAATATAGAGCTTCTTGAGCACTATGGTTTCCTCCTACAAGAAAATCCAAACGACAAAATTTTTATCCCTCTTGAATCTGCTGTATATACCTCCAGTTCATGGCCTAAAGAGTCGCTTTATATTTGCCACGACGGGAAGCCTTCCTTTGCATTACTGTCTGCATTGAGGTTGTGTGCAACCCCTAAAAATAAGCGCAAGTCTGTCGGGCATATTGTGTATTCTGGTTCTCAGTTGTCTGTGGACAATGAAATTGTTGTCATGAAATGGCTTTCAAAGACTTGCGATTCTGCATTGAAGAGTTTGCCGACATCAATGGATGAAGACACAATACTACTGAATGCAATGGATAATAGTCAAGATTTTTGTAGTTTCATGGAAATCACCAAACTGTTGTCATGTAGGGATGAGATTTGTGGCTTTATGGAAGTTAATAATCTGCAGGATGGCCATGGTTTAAGTGATAAAATTGTATCCAGAAAAGCTAGAAGGTCCATGGACAAGTGGAAATTGGCTGTTCAATGGCGGCTTAGGTATAAAAAAGTGCTTGTGAATTGTATCTCTTACTGCAATGAAATACTTGAGTCTCTCTTGGCATAA 1506 0.4143 MKIFRKHGFCSKMMEEEEEGRLVSFLRWAGELGISDAAIINLPQHSLSCLGYSLCVSHFPHSGGRGLGAVRDLRSGELILRVPKSALMTSENVMQDKKLSVAVNNHPHLSSAQILIVCLLYEMGKGKSSKWLPYLMHLPHTYDILATFGEFEKQALQVDEARWVTEKAVLQAKSEWKEANALMEEIKLKSQLLTFKAWLWATATISSRTLHIPWDEAGCLCPVGDLFNYDAPGREPCDPEDKENLSSNSSFQVTSVSNVEELDSHSQRLTDGGFEEDVNSYCFYARENYKQGEQVLLCYGLYTNIELLEHYGFLLQENPNDKIFIPLESAVYTSSSWPKESLYICHDGKPSFALLSALRLCATPKNKRKSVGHIVYSGSQLSVDNEIVVMKWLSKTCDSALKSLPTSMDEDTILLNAMDNSQDFCSFMEITKLLSCRDEICGFMEVNNLQDGHGLSDKIVSRKARRSMDKWKLAVQWRLRYKKVLVNCISYCNEILESLLA 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1094 501 Pfam SET domain 64 300 IPR001214 GO:0005515
Lele03g1094 501 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 310 426 IPR036464 -
Lele03g1094 501 Pfam Rubisco LSMT substrate-binding 349 485 IPR015353 -
Lele03g1094 501 FunFam Protein SET DOMAIN GROUP 40 22 314 - -
Lele03g1094 501 SUPERFAMILY SET domain 56 318 IPR046341 -
Lele03g1094 501 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 24 429 - -
Lele03g1094 501 ProSiteProfiles SET domain profile. 52 300 IPR001214 GO:0005515
Lele03g1094 501 CDD SET_LSMT 53 314 - -
Lele03g1094 501 Gene3D - 315 500 IPR036464 -
Lele03g1094 501 Gene3D set domain protein methyltransferase, domain 1 21 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1094 Lele-ChrLele03 6371660 6375076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1094 21 328 NAC Transcription Factor Family AT3G56570 22.067 8.78e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele03g1094 SET 1.2e-11 No_clan