LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele03g1077	ATGTCATTGGTTCATGACGAGCCTCATGGCGCATCATGTCTTCAATTGAACAGAAGGAAGAGTCTAAGGGAAACGAGCAAAAATGTTAAACTGATCAAGAGTTATCGCCAAATGGTTGAGGAGGAACTATTCAAGATTTGTAGTGACATGTTTACAATCATTGATGAGCATCTGGTTTCCTCTGCCGCATCAGGAGAAGCCACTGTTTTCTACTACAAGATGAAGGGTGATTATTATCGGTATCTTGCTGAGTTCAAGACTGACCAAGAAAAGAAAGATGCAGCTGATCAGTCAATGAAAGCATATGAGGCTGCCTCAGACACTGCAAACAAAGATCTTCGATCAACACACCCAATCCGTCTCGGACTTGCACTCAACTTCTCTGTCTTCCATTATGAGATCATGAATTCTCCTGGAAGGGCCTGTCAATTGGCTAAGCAAGCCTTTGATGAGGCAATTGCGGATTTAGACAGCCTGAGTGAAGAGTCATACAAAGACAGCACTTTGTTCATGCAGTTGTTGAGAGACAACCTGACTCTTTGGACCTTTGATTTGCCTGAGGATGGAGGTGAAGATAGCAGCAAACCTGAAGAGTCCAAACCTGCTAAACCTAAGAAAGGTGTCAATTGGGATACAGTTTGGAAGCTTCTAGAGCAATTTCGACAAGGCGACTGGATGGCAATGGCATTTTCCTTTGGCTTCCCCTTTGGTTCAATAGCCTCATACGACTATGCTAGTACAAACAAAGAATTCCATTGGCTGGCATCTGTCCTCACTGGTATCATCTCCTGTGTTATTGTCTATAGATTAACCGCTCTTCTGGGCACTCTGTTGTTTGAGGGATATGGCAAGTTGAGCAGTGCACAAAAAACTGAATGGAACAACAGGGGGTTCTCAACAGTCCATGCTGTATTTGTATCAATTGCATCTTTCTACCTCCTGATGGTGTCAGATATCTTCAATAAGGATTTGGATGATGAACCAGTAATTAGTAGATCATCTACTTTGTCAAATACTGTATTTGGGATTTCTGTAGGTTATTTTCTATCAGATCTTGCAATGATTCTTTGGCATTTTCCGGCTTTAGGGGGCCTGGAATATGTTCTGCACCATGGACTGTCCATGTTTTCCATCATCCTCTCTCTACTAAGTGGTCAAGCACAGCTCTACATACTAATGGTTCTTTTTACTGAAAGCACTACTCCTTGTGTAAATCTAAGATGGTACTTGGATAATCTTGGTCTTAAGAACTCAAAACTCTACATTGGGAATGGCATTGTATTGTTCCTTGGGTGGTTGATAGCGAGGATTATTCTGTTCATATTCTTTTTTATCCATCTGTGGATCCATTTCAATGAGGTCAAGACAATCTTTCCTCTCGGCTTCTACAGCTTGCTTGTGGTGCCACCCATGTTGACAATCATGAATATATTCTGGTTCTGGAAGATTGCTAAAGGTTTAGTTAAAACTCTTTCAAAAGCGAAACACAAGAAGTGA	1497	0.4155	MSLVHDEPHGASCLQLNRRKSLRETSKNVKLIKSYRQMVEEELFKICSDMFTIIDEHLVSSAASGEATVFYYKMKGDYYRYLAEFKTDQEKKDAADQSMKAYEAASDTANKDLRSTHPIRLGLALNFSVFHYEIMNSPGRACQLAKQAFDEAIADLDSLSEESYKDSTLFMQLLRDNLTLWTFDLPEDGGEDSSKPEESKPAKPKKGVNWDTVWKLLEQFRQGDWMAMAFSFGFPFGSIASYDYASTNKEFHWLASVLTGIISCVIVYRLTALLGTLLFEGYGKLSSAQKTEWNNRGFSTVHAVFVSIASFYLLMVSDIFNKDLDDEPVISRSSTLSNTVFGISVGYFLSDLAMILWHFPALGGLEYVLHHGLSMFSIILSLLSGQAQLYILMVLFTESTTPCVNLRWYLDNLGLKNSKLYIGNGIVLFLGWLIARIILFIFFFIHLWIHFNEVKTIFPLGFYSLLVVPPMLTIMNIFWFWKIAKGLVKTLSKAKHKK	498

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele03g1077	498	SMART	1433_4	1	195	IPR023410	-
	Lele03g1077	498	Pfam	TLC domain	292	485	IPR006634	GO:0016020
	Lele03g1077	498	SMART	lag1_27	288	492	IPR006634	GO:0016020
	Lele03g1077	498	ProSiteProfiles	TLC domain profile.	288	492	IPR006634	GO:0016020
	Lele03g1077	498	SUPERFAMILY	14-3-3 protein	24	189	IPR036815	-
	Lele03g1077	498	Pfam	14-3-3 protein	19	182	IPR023410	-
	Lele03g1077	498	Gene3D	-	11	194	IPR036815	-
	Lele03g1077	498	PANTHER	14-3-3 PROTEIN	18	184	IPR000308	-
	Lele03g1077	498	PRINTS	14-3-3 protein zeta signature	35	59	IPR000308	-
	Lele03g1077	498	PRINTS	14-3-3 protein zeta signature	66	88	IPR000308	-
	Lele03g1077	498	PRINTS	14-3-3 protein zeta signature	101	127	IPR000308	-
	Lele03g1077	498	PRINTS	14-3-3 protein zeta signature	155	184	IPR000308	-
	Lele03g1077	498	PRINTS	14-3-3 protein zeta signature	128	154	IPR000308	-
	Lele03g1077	498	Coils	Coil	142	162	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele03g1077	Lele-ChrLele03	6258789	6263863	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele03g1077	16	204	14-3-3 family	AT1G26480	72.775	5.42e-96	290

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele25g1360	25	9429492	9430924	Lele03g1077	03	6258789	6263863	CCT
	Lele26g1367	26	9332148	9338237	Lele03g1077	03	6258789	6263863	CCT
	Lele27g0722	27	15375684	15380462	Lele03g1077	03	6258789	6263863	CCT
	Lele28g1353	28	9368017	9384497	Lele03g1077	03	6258789	6263863	CCT
	Lele03g1077	03	6258789	6263863	Lele03g1077	03	6258789	6263863	ECH
	Lele01g1072	01	6265419	6268350	Lele03g1077	03	6258789	6263863	hybridization
	Lele02g1098	02	6945959	6948547	Lele03g1077	03	6258789	6263863	hybridization