Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele03g1075 ATGGAGTCGGTTCTGAAGAAATACTTCGGGTTTTCCGAGTTCCGCCCGTATCAGAAGGATGTCATCGAGAAAATATTAGAGAAAAGGGACTGCTTGGTAGTCATGGCTACTGGTAGTGGGAAGTCCTTGTGCTATCAGGTACCTCCATTGGTTGCTAGAAAGACTGGGATAGTTGTTAGCCCTCTCATTTCATTAATGCAAGACCAGGTAATGGCTTTGCAACAACGGGGTATCAGAGCTGAGTATCTTGGGAGCGCACAGACTGATCCCACTGTCCAGACTAAAGCTGAGAGTGGCCAATTTGACATTCTGTTCTTGACTCCCGAGAAGGCGTGCTTAATTCCTACCAGCTTCTGGTTGAACTTGCTGAAGGCAGGGATTTGTCTTTTTGCTGTTGACGAGGCACATTGCATATCAGAATGGGGGCATGATTTTAGGGTGGAATACAAGCAACTAGACAAGTTACGCGGTGTTCTATCTGATGTTCCTTTTGTTGGCCTAACTGCAACTGCTACTGAAAAGGTTCGAGTTGACATCATCAGTTCCTTGAAGATGTGCAATCCTTATGTTTCGATTGGTTCATTTGATCGCACCAATCTTTTCTATGGTGTCAAGCCTTTTAACCCCGGACAACATTTTGTAAATGAGCTTGTGCAAGAGATTTCAAAAAAAATAGCTAGTGGTGGTTCCACTATAATCTACTGCACTACAGTCAAAGATGTAGAACAGATTTCCAAGTCACTTTTGGAAGCTAGTGTTGCAGCTGGGATGTATCACGGGAAAATGAGTAAAAAATCTCGCGAGGAATCTCATAGATCATTTGTTAGAGATGAACTGCAAGTCATGGTAGCAACTGTTGCTTTTGGTATGGGTATAGATAAGCCTGACATAAGACAGGTGATTCACTATGGCTGCCCTAAGAGCCTGGAGTCCTACTACCAGGAAAGTGGGCGATGTGGTCGAGATGGTGTAGCTTCTGTTTGTTGCCTTTACTACACAAGAAGTGACTTTGCAAAGGGCAGCTTTTATTGTGGAGAATTACAAACAGAAAAGCAAAGAAAAGCTGTCATGGAGTCATTAATGGCTGCTGAACGCTATTGCTTGCTGACAACTTGCAGAAGAAAGTTCTTGCTTGAATACTTTGGGGAAAATGTTTCAGCTGATAGATGCGGAAATTGTGATAACTGCATTGTCTCAAAGAAGCAACGGGACATGTCAACAGAAGTATTTCTTCTACTGGCTTGCATTCAATCATGTAGGGGGAAATGGGGCCTGAACATGCCCATTGACATCCTGCGTGGGTCTCGAGCCAAAAGAATTCTTGATGCTCAGTTTGACAAGCTTCCTCTTCATGGCCTTGGCAAGGCTCACCCATCAAATTGGTGGAAAGCACTTGGACATCAATTAATTTCTCATGGTTATTTGAAGGAGACTGTTAGTGATGTGTACAGAACTGTGAGTGTCTGCTCAAAAGGAGAGCAATTTCTGGTCTCTTCTACACCGGATTATCAACCACCCTTAGTTCTGTCATTGACTGCTGAAATGCTTGATGAGGAGGAAAATGGGTCTGCCCCAGAACAATTCAAAAGTTTAGCCACTTCAGATACTGAAGGTTTTTCAGAGGCTGAGGGGCAACTCTACCAAATGCTTTTGGAAGAGAGAATGAAACTTGCAAGAAGTGTTGGAACAGCTCCATATGCCATTTGTGGCGATCAAACAATCAAGAAAATTGCACTGACAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGATGGTGTGAATCAGCACCTGGTAACGAGATATGGAGATCATTTTCTTCAAGCTATTAAACAATTGTCGCAAGGATTGAACCTTTCACTGGATGGAGAAGCAAGACTGCAACTGCAAGCTCCTGCAGTAAGGAAAGTGTCCACTGTAAGTCTAACCAATGAATCAAAGAAGTTGACGCCAGCAAAGTTTGAGGCCTGGAAAATGTGGCATGAAGATGGTCTTTCTATTCGGATGATTGCTAACTTTCCAGGTAGATCAGCTCCTATAAAAGAACAGACTGTTGTTGAATATCTGCTAGAAGCTGCCCGAGAAGGATTACCTTTTGATTGGACTAGATTCTGTGAGATGGTTGGACTGACACCTGAAATCATCTCGGAAATTCAGGGTGCTATTCTAAAAGTTGGATCTACAGAAAAATTGAAGCCTATAAAAAATGAGTTACCAGAAGAGGTAAGCTATGTGCACATCAAGACTTATTTGGCAATGCAAAACTCTGGAATATCTCTTGAAGGCACTCAGGAAGGGAGCAGCCAGGCAGAGAAAGATGGTGAACTCGTGAAGGAGACATCGGATTTACTGCAGAATCCATTCGATACATGCAACATGGAAATAAGTGGGGAAATTGACATGTCTCCTAAGAGTCCGATGAAAAAATGTGACCTAGATAAGGATGAAGAATCGAATGGACATACCAATGGTTGCCAGGTACAGGATCTTCCATTAGTCTGTGAGAAGGGGTTGACAAACAAACGCCAAAAATTCAGTGAACCAAATGAAGAAAATCATATCAAATTGAAGGCAACAGAGAGTTCCATAGTAGAGTGGCTGAAGAACCATGAAGGGGCTACATTGAATGATATTGTGAAGAATTTCAATGGATCTAGTGAAGATTCTGTGGTGGAACTACTGAATTGCCTTGAGGCTGAGTTTTTTATCTATAAGAAAAATAGCATGTACAGGCTTATGTGA 2742 0.4245 MESVLKKYFGFSEFRPYQKDVIEKILEKRDCLVVMATGSGKSLCYQVPPLVARKTGIVVSPLISLMQDQVMALQQRGIRAEYLGSAQTDPTVQTKAESGQFDILFLTPEKACLIPTSFWLNLLKAGICLFAVDEAHCISEWGHDFRVEYKQLDKLRGVLSDVPFVGLTATATEKVRVDIISSLKMCNPYVSIGSFDRTNLFYGVKPFNPGQHFVNELVQEISKKIASGGSTIIYCTTVKDVEQISKSLLEASVAAGMYHGKMSKKSREESHRSFVRDELQVMVATVAFGMGIDKPDIRQVIHYGCPKSLESYYQESGRCGRDGVASVCCLYYTRSDFAKGSFYCGELQTEKQRKAVMESLMAAERYCLLTTCRRKFLLEYFGENVSADRCGNCDNCIVSKKQRDMSTEVFLLLACIQSCRGKWGLNMPIDILRGSRAKRILDAQFDKLPLHGLGKAHPSNWWKALGHQLISHGYLKETVSDVYRTVSVCSKGEQFLVSSTPDYQPPLVLSLTAEMLDEEENGSAPEQFKSLATSDTEGFSEAEGQLYQMLLEERMKLARSVGTAPYAICGDQTIKKIALTRPSTKARLANIDGVNQHLVTRYGDHFLQAIKQLSQGLNLSLDGEARLQLQAPAVRKVSTVSLTNESKKLTPAKFEAWKMWHEDGLSIRMIANFPGRSAPIKEQTVVEYLLEAAREGLPFDWTRFCEMVGLTPEIISEIQGAILKVGSTEKLKPIKNELPEEVSYVHIKTYLAMQNSGISLEGTQEGSSQAEKDGELVKETSDLLQNPFDTCNMEISGEIDMSPKSPMKKCDLDKDEESNGHTNGCQVQDLPLVCEKGLTNKRQKFSEPNEENHIKLKATESSIVEWLKNHEGATLNDIVKNFNGSSEDSVVELLNCLEAEFFIYKKNSMYRLM 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele03g1075 913 FunFam ATP-dependent DNA helicase 536 626 - -
Lele03g1075 913 Pfam Helix-turn-helix domain 655 751 IPR029491 -
Lele03g1075 913 Pfam Helicase conserved C-terminal domain 217 322 IPR001650 -
Lele03g1075 913 Gene3D - 197 399 IPR027417 -
Lele03g1075 913 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 3 456 IPR004589 GO:0004386|GO:0006310
Lele03g1075 913 SMART helicmild6 242 323 IPR001650 -
Lele03g1075 913 Pfam DEAD/DEAH box helicase 16 175 IPR011545 GO:0003676|GO:0005524
Lele03g1075 913 SMART RQC_2 404 508 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lele03g1075 913 SMART hrdc7 540 620 IPR002121 GO:0003676
Lele03g1075 913 SUPERFAMILY HRDC-like 539 615 IPR010997 GO:0000166|GO:0044237
Lele03g1075 913 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 22 189 IPR014001 -
Lele03g1075 913 Pfam RecQ zinc-binding 336 396 IPR032284 -
Lele03g1075 913 FunFam ATP-dependent DNA helicase 399 523 - -
Lele03g1075 913 FunFam ATP-dependent DNA helicase 197 398 - -
Lele03g1075 913 SUPERFAMILY "Winged helix" DNA-binding domain 395 501 IPR036390 -
Lele03g1075 913 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 54 337 IPR027417 -
Lele03g1075 913 CDD DEXHc_RecQ 2 196 - -
Lele03g1075 913 FunFam ATP-dependent DNA helicase 1 195 - -
Lele03g1075 913 MobiDBLite consensus disorder prediction 796 815 - -
Lele03g1075 913 SMART ultradead3 10 205 IPR014001 -
Lele03g1075 913 PANTHER DNA HELICASE RECQ FAMILY MEMBER 2 687 - -
Lele03g1075 913 Gene3D - 400 524 IPR036388 -
Lele03g1075 913 CDD SF2_C_RecQ 197 332 - -
Lele03g1075 913 ProSiteProfiles HRDC domain profile. 540 620 IPR002121 GO:0003676
Lele03g1075 913 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 213 368 IPR001650 -
Lele03g1075 913 Gene3D HRDC domain 536 616 IPR044876 -
Lele03g1075 913 Pfam HRDC domain 545 610 IPR002121 GO:0003676
Lele03g1075 913 Pfam RQC domain 400 496 IPR018982 GO:0006260|GO:0006281|GO:0043138
Lele03g1075 913 Gene3D - 1 195 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele03g1075 Lele-ChrLele03 6244859 6253576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele03g1075 229 331 Eukaryotic Initiation Factors Gene Family AT5G11170 28.155 1.19e-08 56.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele03g1075 03 6244859 6253576 Lele25g1388 25 9937440 9939835 CCT
Lele03g1075 03 6244859 6253576 Lele26g1412 26 9907104 9909493 CCT
Lele03g1075 03 6244859 6253576 Lele27g0698 27 14980488 14982868 CCT
Lele03g1075 03 6244859 6253576 Lele28g1397 28 10092933 10095297 CCT
Lele03g1075 03 6244859 6253576 Lele03g1075 03 6244859 6253576 ECH
Lele01g1070 01 6249734 6257645 Lele03g1075 03 6244859 6253576 hybridization
Lele02g1096 02 6939113 6940632 Lele03g1075 03 6244859 6253576 hybridization